SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.17g229600): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.17g229600): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.17g229600

Feature Type:gene_model
Chromosome:Gm17
Start:38450991
stop:38457056
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g229600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G26040.2AT histone deacetylase 2 JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG1344 KOG Predicted histone deacetylase JGI N/AIEA
PTHR10625Panther HISTONE DEACETYLASE JGI N/AIEA
PTHR10625:SF9Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF00850PFAM Histone deacetylase domain JGI N/AIEA

Proteins Associated with Glyma.17g229600
LocusGene SymbolProtein Name
HDA18 histone deacetylase

Expression Patterns of Glyma.17g229600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g229600 not represented in the dataset
Glyma.17g229600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g229600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g34770 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g229600
>Glyma.17g229600.2 sequence-type=transcript locus=Glyma.17g229600 ID=Glyma.17g229600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATAACCAAATAGTGGAATGTTTCATTAAATAAATAAAACAACAAAACGGTGTATTTCTGGATAATACTACTGTAGCTTATGTAATGTGGAACATTCCATTTTTTCGGTGCCATTCATGATTTTTATCAACCGCTGCGTTTTTTGCATCGAGTATCCGAGTTAAGCAAGGTTCGCCGCCGTCAAAGCGTTTCCGATTCTCCACCACCGCCGTAGCTGCCGCCGTCAACCGTCGCCATCGATGTCGTCTTCTTCCGCCAACGATGCCGAGGCTCTCCGGCGCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAGGTTCCGCTAATCTACTCCGCGTCTTACGACATAGAGTTTCTCGGCATAGAGAAACTGCATCCGTTTGATTCGTCGAAGTGGGGACGCATTTGTGGATTCCTCGTTTCGTTTGGTATTCTTGACAAAAAATGCGTCGTTGAGCCTTTGGAAGCTTCCAAGGATGATCTTCTAGTGGTACACTCTGAATCGTATTTGAATACCCTGAAGCAGAGTTCAAAAGTTGCTATGATAGTTGAGGTCCCTCCTGTGGCATTAATTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTTCCATTCAGGAAGCAGGTTGGAGGAACTATATTGGCTGCGAAACTTGCAAAGGAGAGAGGATGGGCCATTAACATGGGAGGTGGTTTTCATCACTGTTCTGCACAAAAAGGGGGTGGATTCTGTGCTTACGCAGATATTTCTCTATGCATCCACTTTGCTTTTGTTCGGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAACGGTCATGAAATGGACTTCGCTTATGATAGCCGAGTCTATATCCTGGATATGTACAATCCTGGAATATATCCTTTGGATTATGAGGCGAGAAACTACATAAATCAGAAAGTTGAAGTAAAGAGTGGGACAGTTACAGAAGAGTACCTGCAAAAATTAGATGAAGCACTTGAGGTTGCTGGGCATAGGTTTAACCCTGAGTTGGTTATTTATAATGCTGGAACTGACATCCTAGAAGGTGATCCATTAGGAAGGTTGGAGATCAGTCCTGAAGGAATTACCCTTAGAGATGAGAAAGTTTTCCGGTTTGCTCGTGAAAAAAACATTCCTATCGTTATGCTCACTTCAGtttgtGCATTTCACTCATGCAAGTATCTTATTATGTGAAAAAGTAATCTGAAGGAAACCTGAAATTACCCTATCGTATGTCTGACTTCAAAGAGGTGGTTACATGAAGTCCAGTGCTGGAGTCATTGCAGATTCAATAGTCAATCTCTCGAAGAAATGCTTGATAGAAACGAGTGGAGCTCCAAAGTCTACGTAAAGTGCTCCTGTGTTTTACTGATCATGAATGGTCCCTTGTAAGAGTTTTCCAGATCCTTTGTGTATTTGGGTATAGAATGTTTCCATTTTAGTGGAAACTTTGATGTACAGTATTTTAATATAAAAAAGAACTTAGTGTAGATGAAAATGTGTTCTACGTGAGTTGTAACAAGTCCGTAAATGCTGCTGGTATATTAGTACTACATAATGCATAAATGAGTTGTATATTATTTCATCATTTTTTTGGAACGATGGTCTTTTTAGCTTTTTGTTTTGATTTGTCATAAAAATTGGT

>Glyma.17g229600.3 sequence-type=transcript locus=Glyma.17g229600 ID=Glyma.17g229600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATAACCAAATAGTGGAATGTTTCATTAAATAAATAAAACAACAAAACGGTGTATTTCTGGATAATACTACTGTAGCTTATGTAATGTGGAACATTCCATTTTTTCGGTGCCATTCATGATTTTTATCAACCGCTGCGTTTTTTGCATCGAGTATCCGAGTTAAGCAAGGTTCGCCGCCGTCAAAGCGTTTCCGATTCTCCACCACCGCCGTAGCTGCCGCCGTCAACCGTCGCCATCGATGTCGTCTTCTTCCGCCAACGATGCCGAGGCTCTCCGGCGCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAGGTTCCGCTAATCTACTCCGCGTCTTACGACATAGAGTTTCTCGGCATAGAGAAACTGCATCCGTTTGATTCGTCGAAGTGGGGACGCATTTGTGGATTCCTCGTTTCGTTTGGTATTCTTGACAAAAAATGCGTCGTTGAGCCTTTGGAAGCTTCCAAGGATGATCTTCTAGTGGTACACTCTGAATCGTATTTGAATACCCTGAAGCAGAGTTCAAAAGTTGCTATGATAGTTGAGGTCCCTCCTGTGGCATTAATTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTTCCATTCAGGAAGCAGGTTGGAGGAACTATATTGGCTGCGAAACTTGCAAAGGAGAGAGGATGGGCCATTAACATGGGAGGTGGTTTTCATCACTGTTCTGCACAAAAAGGGGGTGGATTCTGTGCTTACGCAGATATTTCTCTATGCATCCACTTTGCTTTTGTTCGGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAACGGTCATGAAATGGACTTCGCTTATGATAGCCGAGTCTATATCCTGGATATGTACAATCCTGGAATATATCCTTTGGATTATGAGGCGAGAAACTACATAAATCAGAAAGTTGAAGTAAAGAGTGGGACAGTTACAGAAGAGTACCTGCAAAAATTAGATGAAGCACTTGAGGTTGCTGGGCATAGGTTTAACCCTGAGTTGGTTATTTATAATGCTGGAACTGACATCCTAGAAGGTGATCCATTAGGAAGGTTGGAGATCAGTCCTGAAGGAATTACCCTTAGAGATGAGAAAGTTTTCCGGTTTGCTCGTGAAAAAAACATTCCTATCGTTATGCTCACTTCAGGTGGTTACATGAAGTCCAGTGCTGGAGTCATTGCAGATTCAATAGTCAATCTCTCGAAGAAATGCTTGATAGAAACGAGTGGAGCTCCAAAGTCTACGTAAAGTGCTCCTGTGTTTTACTGATCATGAATGGTCCCTTGTAAGAGTTTTCCAGATCCTTTGTGTATTTGGGTATAGAATGTTTCCATTTTAGTGGAAACTTTGATGTACAGTATTTTAATATAAAAAAGAACTTAGTGTAGATGAAAATGTGTTCTACGTGAGTTGTAACAAGTCCGTAAATGCTGCTGGTATATTAGTACTACATAATGCATAAATGAGTTGTATATTATTTCATCATTTTTTTGGAACGATGGTCTTTTTAGCTTTTTGTTTTGATTTGTCATAAAAATTGGT
Coding sequences of Glyma.17g229600
>Glyma.17g229600.1 sequence-type=CDS polypeptide=Glyma.17g229600.1.p locus=Glyma.17g229600 ID=Glyma.17g229600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGTCTTCTTCCGCCAACGATGCCGAGGCTCTCCGGCGCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAGGTTCCGCTAATCTACTCCGCGTCTTACGACATAGAGTTTCTCGGCATAGAGAAACTGCATCCGTTTGATTCGTCGAAGTGGGGACGCATTTGTGGATTCCTCGTTTCGTTTGGTATTCTTGACAAAAAATGCGTCGTTGAGCCTTTGGAAGCTTCCAAGGATGATCTTCTAGTGGTACACTCTGAATCGTATTTGAATACCCTGAAGCAGAGTTCAAAAGTTGCTATGATAGTTGAGGTCCCTCCTGTGGCATTAATTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTTCCATTCAGGAAGCAGGTTGGAGGAACTATATTGGCTGCGAAACTTGCAAAGGAGAGAGGATGGGCCATTAACATGGGAGGTGGTTTTCATCACTGTTCTGCACAAAAAGGGGGTGGATTCTGTGCTTACGCAGATATTTCTCTATGCATCCACTTTGCTTTTGTTCGGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAACGGTCATGAAATGGACTTCGCTTATGATAGCCGAGTCTATATCCTGGATATGTACAATCCTGGAATATATCCTTTGGATTATGAGGCGAGAAACTACATAAATCAGAAAGTTGAAGTAAAGAGTGGGACAGTTACAGAAGAGTACCTGCAAAAATTAGATGAAGCACTTGAGGTTGCTGGGCATAGGTTTAACCCTGAGTTGGTTATTTATAATGCTGGAACTGACATCCTAGAAGGTGATCCATTAGGAAGGTTGGAGATCAGTCCTGAAGGAATTACCCTTAGAGATGAGAAAGTTTTCCGGTTTGCTCGTGAAAAAAACATTCCTATCGTTATGCTCACTTCAGGTGGTTACATGAAGTCCAGTGCTGGAGTCATTGCAGATTCAATAGTCAATCTCTCGAAGAAATGCTTGATAGAAACGAGTGGAGCTCCAAAGTCTACGTAA

>Glyma.17g229600.2 sequence-type=CDS polypeptide=Glyma.17g229600.2.p locus=Glyma.17g229600 ID=Glyma.17g229600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGTCTTCTTCCGCCAACGATGCCGAGGCTCTCCGGCGCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAGGTTCCGCTAATCTACTCCGCGTCTTACGACATAGAGTTTCTCGGCATAGAGAAACTGCATCCGTTTGATTCGTCGAAGTGGGGACGCATTTGTGGATTCCTCGTTTCGTTTGGTATTCTTGACAAAAAATGCGTCGTTGAGCCTTTGGAAGCTTCCAAGGATGATCTTCTAGTGGTACACTCTGAATCGTATTTGAATACCCTGAAGCAGAGTTCAAAAGTTGCTATGATAGTTGAGGTCCCTCCTGTGGCATTAATTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTTCCATTCAGGAAGCAGGTTGGAGGAACTATATTGGCTGCGAAACTTGCAAAGGAGAGAGGATGGGCCATTAACATGGGAGGTGGTTTTCATCACTGTTCTGCACAAAAAGGGGGTGGATTCTGTGCTTACGCAGATATTTCTCTATGCATCCACTTTGCTTTTGTTCGGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAACGGTCATGAAATGGACTTCGCTTATGATAGCCGAGTCTATATCCTGGATATGTACAATCCTGGAATATATCCTTTGGATTATGAGGCGAGAAACTACATAAATCAGAAAGTTGAAGTAAAGAGTGGGACAGTTACAGAAGAGTACCTGCAAAAATTAGATGAAGCACTTGAGGTTGCTGGGCATAGGTTTAACCCTGAGTTGGTTATTTATAATGCTGGAACTGACATCCTAGAAGGTGATCCATTAGGAAGGTTGGAGATCAGTCCTGAAGGAATTACCCTTAGAGATGAGAAAGTTTTCCGGTTTGCTCGTGAAAAAAACATTCCTATCGTTATGCTCACTTCAGTTTGTGCATTTCACTCATGCAAGTATCTTATTATGTGA

>Glyma.17g229600.3 sequence-type=CDS polypeptide=Glyma.17g229600.3.p locus=Glyma.17g229600 ID=Glyma.17g229600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGTCTTCTTCCGCCAACGATGCCGAGGCTCTCCGGCGCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAGGTTCCGCTAATCTACTCCGCGTCTTACGACATAGAGTTTCTCGGCATAGAGAAACTGCATCCGTTTGATTCGTCGAAGTGGGGACGCATTTGTGGATTCCTCGTTTCGTTTGGTATTCTTGACAAAAAATGCGTCGTTGAGCCTTTGGAAGCTTCCAAGGATGATCTTCTAGTGGTACACTCTGAATCGTATTTGAATACCCTGAAGCAGAGTTCAAAAGTTGCTATGATAGTTGAGGTCCCTCCTGTGGCATTAATTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTTCCATTCAGGAAGCAGGTTGGAGGAACTATATTGGCTGCGAAACTTGCAAAGGAGAGAGGATGGGCCATTAACATGGGAGGTGGTTTTCATCACTGTTCTGCACAAAAAGGGGGTGGATTCTGTGCTTACGCAGATATTTCTCTATGCATCCACTTTGCTTTTGTTCGGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAACGGTCATGAAATGGACTTCGCTTATGATAGCCGAGTCTATATCCTGGATATGTACAATCCTGGAATATATCCTTTGGATTATGAGGCGAGAAACTACATAAATCAGAAAGTTGAAGTAAAGAGTGGGACAGTTACAGAAGAGTACCTGCAAAAATTAGATGAAGCACTTGAGGTTGCTGGGCATAGGTTTAACCCTGAGTTGGTTATTTATAATGCTGGAACTGACATCCTAGAAGGTGATCCATTAGGAAGGTTGGAGATCAGTCCTGAAGGAATTACCCTTAGAGATGAGAAAGTTTTCCGGTTTGCTCGTGAAAAAAACATTCCTATCGTTATGCTCACTTCAGGTGGTTACATGAAGTCCAGTGCTGGAGTCATTGCAGATTCAATAGTCAATCTCTCGAAGAAATGCTTGATAGAAACGAGTGGAGCTCCAAAGTCTACGTAA
Predicted protein sequences of Glyma.17g229600
>Glyma.17g229600.1.p sequence-type=predicted peptide transcript=Glyma.17g229600.1 locus=Glyma.17g229600 ID=Glyma.17g229600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSSANDAEALRRNRILSSKLYFDVSPSKVPLIYSASYDIEFLGIEKLHPFDSSKWGRICGFLVSFGILDKKCVVEPLEASKDDLLVVHSESYLNTLKQSSKVAMIVEVPPVALIPNCLVQQKVLFPFRKQVGGTILAAKLAKERGWAINMGGGFHHCSAQKGGGFCAYADISLCIHFAFVRLNISRVMIIDLDAHQGNGHEMDFAYDSRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTVTEEYLQKLDEALEVAGHRFNPELVIYNAGTDILEGDPLGRLEISPEGITLRDEKVFRFAREKNIPIVMLTSGGYMKSSAGVIADSIVNLSKKCLIETSGAPKST*

>Glyma.17g229600.2.p sequence-type=predicted peptide transcript=Glyma.17g229600.2 locus=Glyma.17g229600 ID=Glyma.17g229600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSSANDAEALRRNRILSSKLYFDVSPSKVPLIYSASYDIEFLGIEKLHPFDSSKWGRICGFLVSFGILDKKCVVEPLEASKDDLLVVHSESYLNTLKQSSKVAMIVEVPPVALIPNCLVQQKVLFPFRKQVGGTILAAKLAKERGWAINMGGGFHHCSAQKGGGFCAYADISLCIHFAFVRLNISRVMIIDLDAHQGNGHEMDFAYDSRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTVTEEYLQKLDEALEVAGHRFNPELVIYNAGTDILEGDPLGRLEISPEGITLRDEKVFRFAREKNIPIVMLTSVCAFHSCKYLIM*

>Glyma.17g229600.3.p sequence-type=predicted peptide transcript=Glyma.17g229600.3 locus=Glyma.17g229600 ID=Glyma.17g229600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSSANDAEALRRNRILSSKLYFDVSPSKVPLIYSASYDIEFLGIEKLHPFDSSKWGRICGFLVSFGILDKKCVVEPLEASKDDLLVVHSESYLNTLKQSSKVAMIVEVPPVALIPNCLVQQKVLFPFRKQVGGTILAAKLAKERGWAINMGGGFHHCSAQKGGGFCAYADISLCIHFAFVRLNISRVMIIDLDAHQGNGHEMDFAYDSRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTVTEEYLQKLDEALEVAGHRFNPELVIYNAGTDILEGDPLGRLEISPEGITLRDEKVFRFAREKNIPIVMLTSGGYMKSSAGVIADSIVNLSKKCLIETSGAPKST*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo