Glyma.17g227200

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Report for Sequence Feature Glyma.17g227200

Feature Type:	gene_model
Chromosome:	Gm17
Start:	38184820
stop:	38193145
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g227200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11950.1	AT	Putative lysine decarboxylase family protein	JGI	N/A	IEA
GO:0009691	GO-bp	cytokinin biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
PF03641	PFAM	Possible lysine decarboxylase	JGI	N/A	IEA
PWY-2681	SoyCyc9	trans-zeatin biosynthesis	Plant Metabolic Network		ISS
GN7V-48768	SoyCyc9-rxn	N⁶-(Δ²-isopentenyl)-adenosine 5'-monophosphate phosphoribohydrolase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.17g227200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g227200 not represented in the dataset	Glyma.17g227200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g227200

Paralog	Evidence	Comments
Glyma.14g097200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g227200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g34510	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g227200

Limit To All Plant Sequences

>Glyma.17g227200.2 sequence-type=transcript locus=Glyma.17g227200 ID=Glyma.17g227200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAACTTGGTTATAAAGTGTGCTTGACTTTTTTGCTTAGTCAGATAATTAATGACCATATGTGATGTTCAAAATTCGGTTTTTGTTTTCTAATGTTAAGAGGAACATTGACTTGGTGTATGGTGGGGGAAGTGTTGGGCTGATGGGCCTAATATCCCAGAGAATGTATGATGGAGGCTGCCATGTTCTAGGGGTTATTCCAAAAGCTCTCATGCCTCTTGAGATATCTGGTGAACCAGTTGGTGAAGTAAGAATTGTTTCAGATATGCATGAGCGTAAAGCTGCAATGGCTCAAGAAGCTGATGCATTTATCGCCCTCCCTGGAGGATATGGAACTATGGAAGAGCTGTTGGAGATGATAACTTGGGCTCAACTTGGAATTCATAAAAAACCGGTTGGTCTACTCAATGTTGATGGTTACTATAACTCTTTGCTCGCATTATTTGACAATGGTGTTGAAGAAGGCTTCATTAAGCATGGTGCTCGGAATATACTTGTTGCGGCTTCATCAGCCAAAGAACTTATGATGAAGATGGAGCAATATTCTCCTTCCCATGAACATGTAGCTCCTCATGATAGCTGGCAGACAAGGCAATTGGGTAATTATGCAGAACAGGAAAATGCAGAATGAAACATTGATTGGTTGAAGGATTATCCAAATTTTTTATTTTTGTGATGTAACTCTTCATCACTTGAAATGTATACAAGAGTCCCTGTGTATGGGGCCATATGTTGTTTGTTACTTACTGTGCATTGATTTTTTTGAAGTTCTGGTTTTGCATCATTTCATTTCATGGTCAATCGAGTCACTGTGAGAAAGTCATATTTGGTTGTTATTTAACACTGTTTAAAGGGTAAAAAAGTGCATTGAAATTGTAAATAGACAGAGGCTAGTATTTTTATGGCAAATTAAATCTCAGTTGTGCATCATGGGGTGGCAGCTGGCTCCACTATGCAGTGCCAAAATTAGACAATATAGGTGAATCATGGTACCATAGAAGAAAGTAGAGTGATTAATCTCCATAATTTGGCAACTATTGTAGTCTTTTTTCTTTTCTATTAAAAAAGCAGCCCTACCTCAAACATTCTAAATGGATGCTGCTAGGATAACTGTCGTATAATTTTGGTTTAAATAAACTTGTATCTTTGGAACAAAGATGTTCAAATTATAAGTATAGTTGGT

Coding sequences of Glyma.17g227200

Limit To All Plant Sequences

>Glyma.17g227200.1 sequence-type=CDS polypeptide=Glyma.17g227200.1.p locus=Glyma.17g227200 ID=Glyma.17g227200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACATGGCTTCCCCAAAGGCAAGTTCAAGAGCCTCTGTGTCTTTTGCGGCAGCAACTCTGGCAACCGTCAAGTTTTCAGTGACGCCACCATTGAATTGGCCAATGAACTGGTTAAGAGGAACATTGACTTGGTGTATGGTGGGGGAAGTGTTGGGCTGATGGGCCTAATATCCCAGAGAATGTATGATGGAGGCTGCCATGTTCTAGGGGTTATTCCAAAAGCTCTCATGCCTCTTGAGATATCTGGTGAACCAGTTGGTGAAGTAAGAATTGTTTCAGATATGCATGAGCGTAAAGCTGCAATGGCTCAAGAAGCTGATGCATTTATCGCCCTCCCTGGAGGATATGGAACTATGGAAGAGCTGTTGGAGATGATAACTTGGGCTCAACTTGGAATTCATAAAAAACCGGTTGGTCTACTCAATGTTGATGGTTACTATAACTCTTTGCTCGCATTATTTGACAATGGTGTTGAAGAAGGCTTCATTAAGCATGGTGCTCGGAATATACTTGTTGCGGCTTCATCAGCCAAAGAACTTATGATGAAGATGGAGCAATATTCTCCTTCCCATGAACATGTAGCTCCTCATGATAGCTGGCAGACAAGGCAATTGGGTAATTATGCAGAACAGGAAAATGCAGAATGA

>Glyma.17g227200.2 sequence-type=CDS polypeptide=Glyma.17g227200.2.p locus=Glyma.17g227200 ID=Glyma.17g227200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCAAAATTCGGTTTTTGTTTTCTAATGTTAAGAGGAACATTGACTTGGTGTATGGTGGGGGAAGTGTTGGGCTGATGGGCCTAATATCCCAGAGAATGTATGATGGAGGCTGCCATGTTCTAGGGGTTATTCCAAAAGCTCTCATGCCTCTTGAGATATCTGGTGAACCAGTTGGTGAAGTAAGAATTGTTTCAGATATGCATGAGCGTAAAGCTGCAATGGCTCAAGAAGCTGATGCATTTATCGCCCTCCCTGGAGGATATGGAACTATGGAAGAGCTGTTGGAGATGATAACTTGGGCTCAACTTGGAATTCATAAAAAACCGGTTGGTCTACTCAATGTTGATGGTTACTATAACTCTTTGCTCGCATTATTTGACAATGGTGTTGAAGAAGGCTTCATTAAGCATGGTGCTCGGAATATACTTGTTGCGGCTTCATCAGCCAAAGAACTTATGATGAAGATGGAGCAATATTCTCCTTCCCATGAACATGTAGCTCCTCATGATAGCTGGCAGACAAGGCAATTGGGTAATTATGCAGAACAGGAAAATGCAGAATGA

Predicted protein sequences of Glyma.17g227200

Limit To All Plant Sequences

>Glyma.17g227200.1.p sequence-type=predicted peptide transcript=Glyma.17g227200.1 locus=Glyma.17g227200 ID=Glyma.17g227200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEHGFPKGKFKSLCVFCGSNSGNRQVFSDATIELANELVKRNIDLVYGGGSVGLMGLISQRMYDGGCHVLGVIPKALMPLEISGEPVGEVRIVSDMHERKAAMAQEADAFIALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNSLLALFDNGVEEGFIKHGARNILVAASSAKELMMKMEQYSPSHEHVAPHDSWQTRQLGNYAEQENAE*

>Glyma.17g227200.2.p sequence-type=predicted peptide transcript=Glyma.17g227200.2 locus=Glyma.17g227200 ID=Glyma.17g227200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFKIRFLFSNVKRNIDLVYGGGSVGLMGLISQRMYDGGCHVLGVIPKALMPLEISGEPVGEVRIVSDMHERKAAMAQEADAFIALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNSLLALFDNGVEEGFIKHGARNILVAASSAKELMMKMEQYSPSHEHVAPHDSWQTRQLGNYAEQENAE*

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