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Report for Sequence Feature Glyma.17g227100

Feature Type:gene_model
Chromosome:Gm17
Start:38175388
stop:38181189
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g227100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11960.1AT Protein of unknown function (DUF803) JGI N/AIEA
GO:0006811GO-bp ion transport EnsemblGenomesN/AIEA
GO:0015693GO-bp magnesium ion transport EnsemblGenomesN/AIEA
GO:0015693GO-bp magnesium ion transport JGI N/AIEA
GO:1903830GO-bp magnesium ion transmembrane transport EnsemblGenomesN/AIEA
GO:0005768GO-cc endosome EnsemblGenomesN/AIEA
GO:0005769GO-cc early endosome EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0015095GO-mf magnesium ion transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0015095GO-mf magnesium ion transmembrane transporter activity JGI N/AIEA
KOG2922 KOG Uncharacterized conserved protein JGI N/AIEA
PF01925PFAM Sulfite exporter TauE/SafE JGI N/AIEA
PF05653PFAM Magnesium transporter NIPA JGI N/AIEA

Expression Patterns of Glyma.17g227100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g227100 not represented in the dataset
Glyma.17g227100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g227100
ParalogEvidenceComments
Glyma.14g097400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g227100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g34500 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g227100
>Glyma.17g227100.2 sequence-type=transcript locus=Glyma.17g227100 ID=Glyma.17g227100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGAGTATCCGAAGTTCTTCATTTCTAATTATGAAATTTAGTATTTAAGCTCATCAAATCCAACCACTAGTTTATATACTAATTGATATTAGTGTTAATATATTACACTAATAAGAAATAATTGGTAGCTTCTTAGGTAGCATAACAATTGAAACTTGAAAGTAACAGTCTAACAACAGATCGTTAAGGAGACCAAACCAACAGAACAGAGTAACAGAGAGTTAGCATTGCAACAAAGAGAAAGAAAAGTTGAAACATTTTCAGACAGTGGCATGTGGGAATCTATTCTGTTAACGGTGGCTGCCACCGCTGGCAACAACATCGGAAAGATCCTTCAGAAGAAGGGCACTATCATTCTTCCACCTCTCTCTTTCAAACTCAAGGTCTCTGTCATCCAACCAGTTTCTGGCTGTGGACTAGCAATTCTTTCAATCTTTTCTCATTTTTATCTCAAGGAAGTCATGAATGCTGTTGATTGGGTTGGCATTACATTAGCAGGTTTTGGCACAATAGGAGTTGGTGCTGGAGGTGAGGAGCAAGAGGTGGTTGCTCTATCTATTTTTCACATACCAGGGCTGGCATTTATTGTTTTCATCTTGTTTATACTTCTTAGTGGATGGCTTCGAATATGCAAGCGCCAACGAAGAGAACAAGAGATGATGGAATATGACGTCGTTGAGGAAGTCATCTATGGCTTTGAATCTGGTATTTTGTTTGGGATGTCATCTGTAATATCAAAGATGGGATTTCTATTCCTAGAGCAAGGCTTTCCCAAGCTGTTGGTTCCTATGTGCATCATGATCAGCGTGTGTTGTAGTGGCACAGGCATTTACTACCAGACACGTGGTCTAAAGCATGGGAGGGCTATTGTAGTTTCCACATGTGCAGCTGTGGCCTCAATTTTGACTGGTGTTCTTGCTGGGATGCTTGCTTTGGGTGAACGACTTCCTTCGGAGCCAAAAGCTCGCTTGGCACTTCTTCTTGGATGGCTACTTATTATTGTTGGTGTGATTTTACTTGTTGGTTCTACACGGTTAGTAAGATTCCTTTCTTGTTCTTCACGACAAAAAAGAAGCAATGTGGAGAAGAATTTTGGCCTTAGAGGAGCCACTTCTTCCCGTGTGAGAGAACCAAGTCCAAGTGCTGTCATTCAAGCAGCAACATTAAATCATTTACTATCATCATCTTCCAAAGAAAAAGCTTGAGTTGACATGAGCTGGATAATGTTCCTTCATCCCCAGGATTTCTAAGCATTAAGTTGCTTTCTAATCCGTCTGCCAAGGCCAATTCTGTATATTATAGTGGCGCTTCATCAGAGGGCATGACATTTTGGTGATCATTCATTGCTTCTGGCTCACACATTTTGGATGAAATGTTTGTTAACTTCAGATGCCACCTTGTAAAAACTATTCATGAACTTACACTATTTTTGCTTTCAAGGATTGTATATGACAGTGATGATAGCATACCAACATACAAAATTTGTTTTACTTGCACTTAAACAAATTGGTAAACAGTTTATTCGTATGCAGTTGGGATCTTTGCCTATAGCTGTGGCTTTTGTT
Coding sequences of Glyma.17g227100
>Glyma.17g227100.1 sequence-type=CDS polypeptide=Glyma.17g227100.1.p locus=Glyma.17g227100 ID=Glyma.17g227100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGGAATCTATTCTGTTAACGGTGGCTGCCACCGCTGGCAACAACATCGGAAAGATCCTTCAGAAGAAGGGCACTATCATTCTTCCACCTCTCTCTTTCAAACTCAAGGTCATAAGGTCTTATGCTTTAAACAAAACCTGGGTGGTAGGTTTTCTAATAGATATATTTGGGGCATTATTGATGTTAAGGGCATTGTCTCTGGCTCCAGTCTCTGTCATCCAACCAGTTTCTGGCTGTGGACTAGCAATTCTTTCAATCTTTTCTCATTTTTATCTCAAGGAAGTCATGAATGCTGTTGATTGGGTTGGCATTACATTAGCAGGTTTTGGCACAATAGGAGTTGGTGCTGGAGGTGAGGAGCAAGAGGTGGTTGCTCTATCTATTTTTCACATACCAGGGCTGGCATTTATTGTTTTCATCTTGTTTATACTTCTTAGTGGATGGCTTCGAATATGCAAGCGCCAACGAAGAGAACAAGAGATGATGGAATATGACGTCGTTGAGGAAGTCATCTATGGCTTTGAATCTGGTATTTTGTTTGGGATGTCATCTGTAATATCAAAGATGGGATTTCTATTCCTAGAGCAAGGCTTTCCCAAGCTGTTGGTTCCTATGTGCATCATGATCAGCGTGTGTTGTAGTGGCACAGGCATTTACTACCAGACACGTGGTCTAAAGCATGGGAGGGCTATTGTAGTTTCCACATGTGCAGCTGTGGCCTCAATTTTGACTGGTGTTCTTGCTGGGATGCTTGCTTTGGGTGAACGACTTCCTTCGGAGCCAAAAGCTCGCTTGGCACTTCTTCTTGGATGGCTACTTATTATTGTTGGTGTGATTTTACTTGTTGGTTCTACACGGTTAGTAAGATTCCTTTCTTGTTCTTCACGACAAAAAAGAAGCAATGTGGAGAAGAATTTTGGCCTTAGAGGAGCCACTTCTTCCCGTGTGAGAGAACCAAGTCCAAGTGCTGTCATTCAAGCAGCAACATTAAATCATTTACTATCATCATCTTCCAAAGAAAAAGCTTGA

>Glyma.17g227100.2 sequence-type=CDS polypeptide=Glyma.17g227100.2.p locus=Glyma.17g227100 ID=Glyma.17g227100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGGAATCTATTCTGTTAACGGTGGCTGCCACCGCTGGCAACAACATCGGAAAGATCCTTCAGAAGAAGGGCACTATCATTCTTCCACCTCTCTCTTTCAAACTCAAGGTCTCTGTCATCCAACCAGTTTCTGGCTGTGGACTAGCAATTCTTTCAATCTTTTCTCATTTTTATCTCAAGGAAGTCATGAATGCTGTTGATTGGGTTGGCATTACATTAGCAGGTTTTGGCACAATAGGAGTTGGTGCTGGAGGTGAGGAGCAAGAGGTGGTTGCTCTATCTATTTTTCACATACCAGGGCTGGCATTTATTGTTTTCATCTTGTTTATACTTCTTAGTGGATGGCTTCGAATATGCAAGCGCCAACGAAGAGAACAAGAGATGATGGAATATGACGTCGTTGAGGAAGTCATCTATGGCTTTGAATCTGGTATTTTGTTTGGGATGTCATCTGTAATATCAAAGATGGGATTTCTATTCCTAGAGCAAGGCTTTCCCAAGCTGTTGGTTCCTATGTGCATCATGATCAGCGTGTGTTGTAGTGGCACAGGCATTTACTACCAGACACGTGGTCTAAAGCATGGGAGGGCTATTGTAGTTTCCACATGTGCAGCTGTGGCCTCAATTTTGACTGGTGTTCTTGCTGGGATGCTTGCTTTGGGTGAACGACTTCCTTCGGAGCCAAAAGCTCGCTTGGCACTTCTTCTTGGATGGCTACTTATTATTGTTGGTGTGATTTTACTTGTTGGTTCTACACGGTTAGTAAGATTCCTTTCTTGTTCTTCACGACAAAAAAGAAGCAATGTGGAGAAGAATTTTGGCCTTAGAGGAGCCACTTCTTCCCGTGTGAGAGAACCAAGTCCAAGTGCTGTCATTCAAGCAGCAACATTAAATCATTTACTATCATCATCTTCCAAAGAAAAAGCTTGA
Predicted protein sequences of Glyma.17g227100
>Glyma.17g227100.1.p sequence-type=predicted peptide transcript=Glyma.17g227100.1 locus=Glyma.17g227100 ID=Glyma.17g227100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWESILLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRSYALNKTWVVGFLIDIFGALLMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTIGVGAGGEEQEVVALSIFHIPGLAFIVFILFILLSGWLRICKRQRREQEMMEYDVVEEVIYGFESGILFGMSSVISKMGFLFLEQGFPKLLVPMCIMISVCCSGTGIYYQTRGLKHGRAIVVSTCAAVASILTGVLAGMLALGERLPSEPKARLALLLGWLLIIVGVILLVGSTRLVRFLSCSSRQKRSNVEKNFGLRGATSSRVREPSPSAVIQAATLNHLLSSSSKEKA*

>Glyma.17g227100.2.p sequence-type=predicted peptide transcript=Glyma.17g227100.2 locus=Glyma.17g227100 ID=Glyma.17g227100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWESILLTVAATAGNNIGKILQKKGTIILPPLSFKLKVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTIGVGAGGEEQEVVALSIFHIPGLAFIVFILFILLSGWLRICKRQRREQEMMEYDVVEEVIYGFESGILFGMSSVISKMGFLFLEQGFPKLLVPMCIMISVCCSGTGIYYQTRGLKHGRAIVVSTCAAVASILTGVLAGMLALGERLPSEPKARLALLLGWLLIIVGVILLVGSTRLVRFLSCSSRQKRSNVEKNFGLRGATSSRVREPSPSAVIQAATLNHLLSSSSKEKA*






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