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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G31780.2 | AT | monogalactosyl diacylglycerol synthase 1 | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | JGI | N/A | IEA |
| GO:0009247 | GO-bp | glycolipid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009247 | GO-bp | glycolipid biosynthetic process | JGI | N/A | IEA |
| GO:0030259 | GO-bp | lipid glycosylation | JGI | N/A | IEA |
| GO:0016758 | GO-mf | transferase activity, transferring hexosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0016758 | GO-mf | transferase activity, transferring hexosyl groups | JGI | N/A | IEA |
| GO:0030246 | GO-mf | carbohydrate binding | JGI | N/A | IEA |
| PTHR21015 | Panther | GLYCOSYLTRANSFERASE | JGI | N/A | IEA |
| PTHR21015:SF21 | Panther | MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 1, CHLOROPLASTIC | JGI | N/A | IEA |
| PF04101 | PFAM | Glycosyltransferase family 28 C-terminal domain | JGI | N/A | IEA |
| PF06925 | PFAM | Monogalactosyldiacylglycerol (MGDG) synthase | JGI | N/A | IEA |
| PWY-401 | SoyCyc9 | galactolipid biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-58675 | SoyCyc9-rxn | monogalactosyldiacylglycerol synthase | Plant Metabolic Network | ISS |
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Glyma.17g221900 not represented in the dataset |
Glyma.17g221900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g104100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g33780 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g221900.1 sequence-type=CDS polypeptide=Glyma.17g221900.1.p locus=Glyma.17g221900 ID=Glyma.17g221900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAATAACGGCGTTAGTCAAGAATCCGGTGTGCTCCTCGATTTGGCATCCCACGTGAACCGCTTCGCCTTCGATTCCTTCCGTTCCGACTACAACAACAGCAACACCCTTCTCTCCAATTTCTCGCAATTCAACAACACAAGAACCGGAGAAGCGGCAGTCAAACGCAGCGTTTCGCTGGGGCTGAAGGTTGGGGGAGCGAGTGTGCGGTTTAGGAACATTCTCAATGACTTCAACAGAGCCGTTAGGTTTCACTGCGAGAAGATCCCGATTGGGTTCGCCTCGCTTCGCGTCGGTGACGGTGACGGTGACGGTAACGGTGCTGATGGTAACGGGAATGGTGTTAGAGTGGATGAGTGTAGCGGTGTGGAGAATGAAGGGTTTAGAGGGAATGGCGTGGAGGGTGAGAAACCTAAAAAAGTTTTGATTTTGATGAGTGACACTGGTGGGGGGCATAGAGCTTCTGCTGAAGCTATCAAAGCTGCTTTCTATCAAGAATTTGGAGATGATTATCAGGTTTTCGTTACTGATTTGTGGGCTGATCACACACCTTGGCCATTCAACCAACTTCCCAGGAGCTATAGCTTTTTGGTGAAACATGGGCCATTGTGGAAGATGACCTACTATGGAACTGCCCCGCGTGTAGTGCATCAGTCTAATTTTGCTGCAACTGGAACTTTCATAGCTCGCGAGGTTGCTAAAGGCCTAATGAAATATCAGCCAGATATAATAATCAGTGTGCATCCACTGATGCAGCACGTTCCACTTCGAATTTTGAGGTCTAAGGGTCTTTTAAAGAAGATTGTTTTTACTACTGTTATTACAGATTTAAGCACATGCCATCCAACATGGTTTCATAAGCTTGTAACTAGATGCTATTGTCCTACAACAGATGTTGCGCAAAGGGCATTGAAAGCCGGACTGCAGCAATCCCAAATAAAGATTTTTGGTCTACCTGTCCGACCTTCCTTTGTTAAGCCTGTCCGGCCAAAGGATGAACTAAGGAGAGAATTAGGGATGGATGAGGATCTTCCTGCTGTATTATTGATGGGGGGAGGTGAAGGTATGGGGCCCATTGAGGCTACTGCTCGGGCACTTGGAGATTCATTATACGACGAGAATATTGGGGCTCCTGTAGGTCAGATCCTTGTGATCTGTGGTCGTAATAAGAAACTTGCTAACAAACTAAGTTCTATTAGTTGGAAGGTTCCTGTGCAGGTCAAAGGATTTGTTACCAAAATGGAGGAATGCATGGGAGCTTGTGATTGCATAATTACAAAGGCAGGCCCAGGGACGATTGCAGAGGCCCAGATCCGAGGCCTCCCTATTATTCTGAATGATTACATTGCTGGGCAGGAAGCTGGCAATGTCCCCTATGTAGTTGAAAATGGATGTGGGAAGTTTTCAAAATCCCCCAAGGAGATAGCGAAAATCGTAGCCGAGTGGTTTGGTCCAAAAGCTTACGAGCTACAACAAATGTCACAAAATGCATTGAGGCTAGCAAGGCCAGATGCTGTGTTCAAGATTGTACATGACCTTCACGAGCTTGTTAGACAAAGAAGCTACCTACCAGAGTATTCTTGTACAACTTAA
>Glyma.17g221900.1.p sequence-type=predicted peptide transcript=Glyma.17g221900.1 locus=Glyma.17g221900 ID=Glyma.17g221900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNNGVSQESGVLLDLASHVNRFAFDSFRSDYNNSNTLLSNFSQFNNTRTGEAAVKRSVSLGLKVGGASVRFRNILNDFNRAVRFHCEKIPIGFASLRVGDGDGDGNGADGNGNGVRVDECSGVENEGFRGNGVEGEKPKKVLILMSDTGGGHRASAEAIKAAFYQEFGDDYQVFVTDLWADHTPWPFNQLPRSYSFLVKHGPLWKMTYYGTAPRVVHQSNFAATGTFIAREVAKGLMKYQPDIIISVHPLMQHVPLRILRSKGLLKKIVFTTVITDLSTCHPTWFHKLVTRCYCPTTDVAQRALKAGLQQSQIKIFGLPVRPSFVKPVRPKDELRRELGMDEDLPAVLLMGGGEGMGPIEATARALGDSLYDENIGAPVGQILVICGRNKKLANKLSSISWKVPVQVKGFVTKMEECMGACDCIITKAGPGTIAEAQIRGLPIILNDYIAGQEAGNVPYVVENGCGKFSKSPKEIAKIVAEWFGPKAYELQQMSQNALRLARPDAVFKIVHDLHELVRQRSYLPEYSCTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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