SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.17g220800

Feature Type:gene_model
Chromosome:Gm17
Start:37298809
stop:37306818
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g220800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10720.1AT histidine kinase 5 JGI N/AIEA
GO:0000160GO-bp phosphorelay signal transduction system EnsemblGenomesN/AIEA
GO:0000160GO-bp phosphorelay signal transduction system JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0007165GO-bp signal transduction EnsemblGenomesN/AIEA
GO:0007165GO-bp signal transduction JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0023014GO-bp signal transduction by protein phosphorylation EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0000155GO-mf phosphorelay sensor kinase activity EnsemblGenomesN/AIEA
GO:0000155GO-mf phosphorelay sensor kinase activity JGI N/AIEA
GO:0000156GO-mf phosphorelay response regulator activity JGI N/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016772GO-mf transferase activity, transferring phosphorus-containing groups EnsemblGenomesN/AIEA
KOG0519 KOG Sensory transduction histidine kinase JGI N/AIEA
PTHR24423Panther TWO-COMPONENT SENSOR HISTIDINE KINASE JGI N/AIEA
PTHR24423:SF141Panther JGI N/AIEA
PF00072PFAM Response regulator receiver domain JGI N/AIEA
PF00512PFAM His Kinase A (phospho-acceptor) domain JGI N/AIEA
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI N/AIEA

Expression Patterns of Glyma.17g220800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g220800
ParalogEvidenceComments
Glyma.14g105400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g220800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g33670 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g220800
>Glyma.17g220800.1 sequence-type=CDS polypeptide=Glyma.17g220800.1.p locus=Glyma.17g220800 ID=Glyma.17g220800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTTGTGAGATGGAGAGTGATTGTATTGAGGACATGGACATTGAAGTCCTCTCTTCAATGTGGCCTGAAGATATTGGCACTGATGTTGGAAAACAGTTCAATATAGAAAAGCCTGGAAGAGACCAAGATATGTTGGAGGAAGTCACAATCATAGAGGAGCCAACTATAGCTGATTTCCAGCGTCTCATGGAGCTTACAAATTACACAGATAAAGGGTCTTCTCAGCTGGCATACCTCATGCAACACTGGGAGTATAAGCAGGCTAACGCGGTTCGGCTTCTCAGAGAGGAACTTGACAACCTTAGTAAACAAAGGAAGGAAGTTGAGCTCAGGAAGTTGGAGATACTGAAAGACAATCGGTTCGAGGAAGAGAATTATGGTGGTGACAAGCGCCCAGTTTCTATATTGGATGAGGTTTACTATACATGGCAGGATGTGCCAGTGCCACTAAGGAAAAGTGATGTGGTTGTGCAAAACAAGAGGATTGAAATTGAAGCTGAGTATGACACTGTTGTGTATTGGAAACAGCGGGCGCTGCAGTTGGAAAAACAGTTGGAGGCAAGTGTCCAGAGGGAGCAGATACTAATGGACAAGTTGCAAGAAAGTGTAAAGAATCTTGAAAGGCAGTCTTCACCTGTGGAAGAACTATCTCAGATTCTGAAGAGAGCAGATAATTTCTTACATTTTATTCTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGCTTTATCTACAATCATTTTCCGAGTTTACAAGAGGAGGACATCATAGGAAAAACAGATGTTGAAATTTTCACAGGATCCGGTGTTAAGGAATCCCAAGATTTCAAGAGGGAAGTAATGGAAAAAGGGTTGCCTGCAAAAAAAGAAATTACTTTTGAGACAGAATTATTTGGGTCAAAGACATTCTTGATATACGTAGAACCTGTCTTTAGCAAAGCAGGAGAGACAATTGGAGTAAACTATATGGGAATGGAAATAACAGATCAGGTAAGAAAAAGAGAAAGAATGGCAAAGCTTAGGGAAGATATTGCAGTCCAGAAAGCAAAGGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTGTCTGGAGTTGTCAGCATGGCTGAGATTCTTTCCACCACGAAACTCGATCGGGAGCAAAGGCAGCTCTTGAATGTCATGATATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATATTAACCTTAGAAGGAAATGTGGCAGATGATATACCTGTTGAGGTCATTGGAGATGTTTTAAGGATTCGGCAGATTCTCACAAATTTAGTCAGCAATGCAGTAAAGTTTACACATGAAGGCAAAGTTGGCATAAACCTGTACGTTGTTACAGAACCACCTTTTGCCAAAGCAGAAGGCCATCAAAAGATGATCACAGAACAGTCTACAAATTCAGCAAATGGGGTGAAGGAAGAGAAACGTGCATCAACGCCGCGAAGCAACGATGATCAAAATTGTCTTGATGGTCAGAAAAACAATGACCATCCTAGCCAAAATCATGCAGTCAATGATGAATGCAGATCTTCAGTTAAAAGTGAATGCTCAATAAATGGAGATACTGAGGAGCAAACGCATTCAACTGAAACTGTGTGGATACGTTGTGATGTATATGACACAGGAATTGGAATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTAAGTGCTGATCATGCTCGAAAGTATGGTGGCACAGGGCTGGGACTAGCAATATGCAAACAGCTGGTTGAGTTAATGGGGGGTCGTTTAACAGTGACTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTTCCATACAAGGTTTCAACAGTTTGTGATGATTCTGATGACCCAGATGAGCTCTCAGATGTGGATGATAATGATGACGATACAACAGAAGGCTTCTTCCAATTCCAACCTCGCACTTTGGGCTCTCTCTTCTCTTCTAATGGACCTACCAGGCCACAAAATGTACTACCGGGATTCAGAAGCTCACACAACTTCAATGGTTTTTCAGAGAATTCTTTCTCATTCCTCACTACCAACATAATATCAAAAGGGACTAATTCAACCGAGGATGCTTCTTCAGTCATTGTTGATGCTCCAGAGATGTCTGAATCAACAGGTTCATCAAGTCACAGCCCTCAAACAAAGCATGAAAATGTAGTTAACACAAACAACCAGAATCAAGATAAGGCACATGCTCGGTTACAGAATGGTAGTGTAGACTCTTCTCAACATAAGGAGGCAATGACTCTAGGAACAATGTCAAGTGAACCACAACAAACATGTCAAGGTCAAGTGAAGACAGACATAACCTCCCAAAGTGTTATTAAGAGTAATAAATATACATCATCAGAAGTAACCAAATCCACATTAGGGCCTAAGATTCTTCTTGTTGAAGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAAGAGGTTAGGATACGGCATGGATGTTGTGAATAATGGAGTGGAAGCCGTACGTGCAGTGCAGCGCCATACTTATGATGTCATTTTGATGGATGTTTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTCGGTCTTATGAGGAAACAGGCAATTGGGAAGCTGCAAGAGAAGCTGGAATTGAACAATGTTCACCAGCTTCAAATGAATGTTCTGTACCACTTAAAAACCGGATCCACATCATTGCGATGACAGCAAACACAATGTCAGAGAGTGCTGACGAATGTTATGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACATTCCAAAAACTGAAAGATTGTCTAGAACAGTACCTGAGGTGA
Predicted protein sequences of Glyma.17g220800
>Glyma.17g220800.1.p sequence-type=predicted peptide transcript=Glyma.17g220800.1 locus=Glyma.17g220800 ID=Glyma.17g220800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVCEMESDCIEDMDIEVLSSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIADFQRLMELTNYTDKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVELRKLEILKDNRFEEENYGGDKRPVSILDEVYYTWQDVPVPLRKSDVVVQNKRIEIEAEYDTVVYWKQRALQLEKQLEASVQREQILMDKLQESVKNLERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGVNYMGMEITDQVRKRERMAKLREDIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGNVADDIPVEVIGDVLRIRQILTNLVSNAVKFTHEGKVGINLYVVTEPPFAKAEGHQKMITEQSTNSANGVKEEKRASTPRSNDDQNCLDGQKNNDHPSQNHAVNDECRSSVKSECSINGDTEEQTHSTETVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHCGSTFTFILPYKVSTVCDDSDDPDELSDVDDNDDDTTEGFFQFQPRTLGSLFSSNGPTRPQNVLPGFRSSHNFNGFSENSFSFLTTNIISKGTNSTEDASSVIVDAPEMSESTGSSSHSPQTKHENVVNTNNQNQDKAHARLQNGSVDSSQHKEAMTLGTMSSEPQQTCQGQVKTDITSQSVIKSNKYTSSEVTKSTLGPKILLVEDNKINVMVTQSMMKRLGYGMDVVNNGVEAVRAVQRHTYDVILMDVYMPVMNGLQTTKLIRSYEETGNWEAAREAGIEQCSPASNECSVPLKNRIHIIAMTANTMSESADECYANGMDSFVSKPVTFQKLKDCLEQYLR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo