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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10790.1 | AT | ubiquitin-specific protease 22 | JGI | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0006511 | GO-bp | ubiquitin-dependent protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006511 | GO-bp | ubiquitin-dependent protein catabolic process | JGI | N/A | IEA |
| GO:0016579 | GO-bp | protein deubiquitination | EnsemblGenomes | N/A | IEA |
| GO:0004221 | GO-mf | ubiquitin thiolesterase activity | JGI | N/A | IEA |
| GO:0008233 | GO-mf | peptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0008234 | GO-mf | cysteine-type peptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0036459 | GO-mf | thiol-dependent ubiquitinyl hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG1867 | KOG | Ubiquitin-specific protease | JGI | N/A | IEA |
| PTHR24006 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR24006:SF57 | Panther | JGI | N/A | IEA | |
| PF00443 | PFAM | Ubiquitin carboxyl-terminal hydrolase | JGI | N/A | IEA |
| PF02148 | PFAM | Zn-finger in ubiquitin-hydrolases and other protein | JGI | N/A | IEA |
|
Glyma.17g218300 not represented in the dataset |
Glyma.17g218300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g109000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g33350 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g218300.2 sequence-type=transcript locus=Glyma.17g218300 ID=Glyma.17g218300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 tttttttcctttctttTCAATAGAAAAAAAAAAAAAAGCAAAAGCTCTCAAACAACAATTTCTGCTGGGTCTTCTCTTCAGAGTCAGACTCTAAAAGCAAGCATCTATCTTATTGATGGAAGCGTGTTTTGGTTATTTTATTTCATTtcatgattcatgatcatcatcatcatcttcTCTCGACAAAATCAATAACTGTCCACTTCTACTTCTTTTCACGTTTTCAATCgttcttgttcttgtctttgttctttgatcttcattcattcttttttCGATCACCTCATTCTTAAAGAGAAACCATCAATAACCACCCTTCAGTTTCCGCAACAATCAATATTTTGTTTTTGTTTTCAAAAGATTGAATTTTAACCTTCTTTGAAAAAAATATCCCATCACCACCGTTATGTTGCTAAGAAACCCTTCTTTATACACAAACCCAGAACCCTGCCAGCACCTTGCTGAGTACAAGCTCAAGCATGGCTTCGATGGCTACAAAGCCATCCAAAAGCTCCTTGTGATTTCTCCAATTGGGAAAGCCAGTGTCAAGAAACCCAACACAAAGGTACCCAGATGCGGTTTCTGTAATGGGTGTGAAGGGAGATTCTATCTATGCCTGATTTGTTCTTCATTTTCATGTTTGGATCACACCCTTTTGCACCCTCAATCAGAAACAGGTCATGCTGTCTTTGTGGACATTGAAAGGGCTGAACTTTTTTGTGGGGTGTGCCGTGATCAATTGTATGACCCTGATTTTGACCAAGTTGTGATGTCTAAGCACTCATTGGGGGTGGCAAGTGGTGTCACTGGGAATGAAAGCATTGGCCAGAGATTGATCAAGAGGAGGAGATTGGCTTCTGGTGTTGTTGGATTGGATTTGCAGAAATCTAAGTGTAGAGTTTCCACCAAAGATCTGAGGGAAAAATCGTGTTACCCTGTGGGGTTGAGGGGGTTGAACAATCTTGGTAGCACGTGCTTCATGAATTCGGTGTTGCAAGTGTTGCTAAATGCACCTCCTTTCAGGGACTATTTCCTGAGTGGTGGACACCGGTTGGAGGCTTGTCATCACAGAAGAACCGCGGATCTGATGTGTTGTTTGCTTTGTGATGTCAATGCTATTTTTTCGGCTGCGTATTCGGGGGATCGGAGTCCGTATAGTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCATGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAGATGCTATCCATGAGAAAGAGAGCAAAACAAGGAATGGAAGCAAAGGTAATGGAGACTGTCAATGCATTGCTCATAAGGTGTTCTATGGGTTATTGAGATCAGATGTTACCTGCATGGCCTGTGGATTCACCTCAACAACCTATGACCCTTGTGTGGACATTTCACTTAACTTGGATACCAATGTCTCTTCAACAGAAAAGGTGGTGACACATTCGGGGACGCTCGAGTCTGGCCATTATGTTTCTTTCGTGCGTTTAAGGAATCAGTGGTACAGATGTGATGATGCTTGGATAACTGTGGTTGATGAGGCTACAGTCAGAGCCTCACAGTGTTACATGATTTTTTATGTGCAAAAGTTGCAGCACAATAAAGCAAATGAAGACCCGAGTCATGTGCCAAATTCCCCCGGAAGAGAGCTATTTCTTCCTATTGCTGGATTTTGCTAGCGAGGATGATTATAAAGTTTGGAGAATCACACTTCACAGTTAACAAGATTGATTTGCAATATGCATCTTAAAGTTTCGGACTGCTAAAACCCGGATATGCGAATGAGAAGCCAGGTAGTCGTGTACATAACTCTTTTCAACTGATGCTAACAAAAGTTGTTCGAAAACCATTATTACTCTTCTGTCTCCACCAAGTAAAGCATGGAGAAAAAGAAAGTTAAGGGCAAAAAGGTGATTATGTGGATGACTGTCTCTGATTCCTGTGTCTAACAAGGACATTGTAATAATACTCATAGTCCAATGTGCACATTGCATTTTGTCTGCCTTTTATTGTGAGAGTGCAGATTACTTAAATGGGTTTCTTCTTTGGTGCACAATAGACAAGGGTTTTGTTGAAGGCAAGTTTATTCTTTTAAAGTTGATTTGAGGAAATATTATCGCTCTAACTTTAAGTTATGTTTGCTGGTTGAGTGAAAAATGCTGCTATGTTATTAATAATATCTGATATTGAAGGCAAGAAAGTAGTTCATTGATAATCGGATGACATGATGTCACTATATTAGATGTATTGAAATTCAAACGTGCAAGATAATTTGGAATCAAAGGGTGAAAAATGGATTTCA
>Glyma.17g218300.1 sequence-type=CDS polypeptide=Glyma.17g218300.1.p locus=Glyma.17g218300 ID=Glyma.17g218300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTGCTAAGAAACCCTTCTTTATACACAAACCCAGAACCCTGCCAGCACCTTGCTGAGTACAAGCTCAAGCATGGCTTCGATGGCTACAAAGCCATCCAAAAGCTCCTTGTGATTTCTCCAATTGGGAAAGCCAGTGTCAAGAAACCCAACACAAAGGTACCCAGATGCGGTTTCTGTAATGGGTGTGAAGGGAGATTCTATCTATGCCTGATTTGTTCTTCATTTTCATGTTTGGATCACACCCTTTTGCACCCTCAATCAGAAACAGGTCATGCTGTCTTTGTGGACATTGAAAGGGCTGAACTTTTTTGTGGGGTGTGCCGTGATCAATTGTATGACCCTGATTTTGACCAAGTTGTGATGTCTAAGCACTCATTGGGGGTGGCAAGTGGTGTCACTGGGAATGAAAGCATTGGCCAGAGATTGATCAAGAGGAGGAGATTGGCTTCTGGTGTTGTTGGATTGGATTTGCAGAAATCTAAGTGTAGAGTTTCCACCAAAGATCTGAGGGAAAAATCGTGTTACCCTGTGGGGTTGAGGGGGTTGAACAATCTTGGTAGCACGTGCTTCATGAATTCGGTGTTGCAAGTGTTGCTAAATGCACCTCCTTTCAGGGACTATTTCCTGAGTGGTGGACACCGGTTGGAGGCTTGTCATCACAGAAGAACCGCGGATCTGATGTGTTGTTTGCTTTGTGATGTCAATGCTATTTTTTCGGCTGCGTATTCGGGGGATCGGAGTCCGTATAGTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCATGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAGATGCTATCCATGAGAAAGAGAGCAAAACAAGGAATGGAAGCAAAGGTAATGGAGACTGTCAATGCATTGCTCATAAGGTGTTCTATGGGTTATTGAGATCAGATGTTACCTGCATGGCCTGTGGATTCACCTCAACAACCTATGACCCTTGTGTGGACATTTCACTTAACTTGGATACCAATGTCTCTTCAACAGAAAAGGGTAAAAAACTTACCAAACAAAATGAGGATGGCAGTATGTCTACACTTTTTGGTTGTTTAGATTTATTCACAAGGCCAGAGAAGTTGGGGTCAGACCAGAAACTTTACTGCCGGAATTGTCGGGAAAGGCAGGACTCGTTGAAGCAAATGTCTATTAGAAAGCTTCCATTAGTACTTAGTTTGCATGTAAAACGATTTGAACACTCCTTTGTTAAAAAGTCTTCAAGAAAAATAGATCGCTACCTACACTTCCCATTTTCCTTAGATATGTCCCCATATCTGTCCTCCTCAATCCTCAGAGCCAGATATGGAAATAGAATTTTTAATTTTGGGGGTGATCAATCAGATATGTTTTCTGAGTTTGAGATTTTTGCAGTGGTGACACATTCGGGGACGCTCGAGTCTGGCCATTATGTTTCTTTCGTGCGTTTAAGGAATCAGTGGTACAGATGTGATGATGCTTGGATAACTGTGGTTGATGAGGCTACAGTCAGAGCCTCACAGTGTTACATGATTTTTTATGTGCAAAAGTTGCAGCACAATAAAGCAAATGAAGACCCGAGTCATGTGCCAAATTCCCCCGGAAGAGAGCTATTTCTTCCTATTGCTGGATTTTGCTAG >Glyma.17g218300.2 sequence-type=CDS polypeptide=Glyma.17g218300.2.p locus=Glyma.17g218300 ID=Glyma.17g218300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTGCTAAGAAACCCTTCTTTATACACAAACCCAGAACCCTGCCAGCACCTTGCTGAGTACAAGCTCAAGCATGGCTTCGATGGCTACAAAGCCATCCAAAAGCTCCTTGTGATTTCTCCAATTGGGAAAGCCAGTGTCAAGAAACCCAACACAAAGGTACCCAGATGCGGTTTCTGTAATGGGTGTGAAGGGAGATTCTATCTATGCCTGATTTGTTCTTCATTTTCATGTTTGGATCACACCCTTTTGCACCCTCAATCAGAAACAGGTCATGCTGTCTTTGTGGACATTGAAAGGGCTGAACTTTTTTGTGGGGTGTGCCGTGATCAATTGTATGACCCTGATTTTGACCAAGTTGTGATGTCTAAGCACTCATTGGGGGTGGCAAGTGGTGTCACTGGGAATGAAAGCATTGGCCAGAGATTGATCAAGAGGAGGAGATTGGCTTCTGGTGTTGTTGGATTGGATTTGCAGAAATCTAAGTGTAGAGTTTCCACCAAAGATCTGAGGGAAAAATCGTGTTACCCTGTGGGGTTGAGGGGGTTGAACAATCTTGGTAGCACGTGCTTCATGAATTCGGTGTTGCAAGTGTTGCTAAATGCACCTCCTTTCAGGGACTATTTCCTGAGTGGTGGACACCGGTTGGAGGCTTGTCATCACAGAAGAACCGCGGATCTGATGTGTTGTTTGCTTTGTGATGTCAATGCTATTTTTTCGGCTGCGTATTCGGGGGATCGGAGTCCGTATAGTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCATGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAGATGCTATCCATGAGAAAGAGAGCAAAACAAGGAATGGAAGCAAAGGTAATGGAGACTGTCAATGCATTGCTCATAAGGTGTTCTATGGGTTATTGAGATCAGATGTTACCTGCATGGCCTGTGGATTCACCTCAACAACCTATGACCCTTGTGTGGACATTTCACTTAACTTGGATACCAATGTCTCTTCAACAGAAAAGGTGGTGACACATTCGGGGACGCTCGAGTCTGGCCATTATGTTTCTTTCGTGCGTTTAAGGAATCAGTGGTACAGATGTGATGATGCTTGGATAACTGTGGTTGATGAGGCTACAGTCAGAGCCTCACAGTGTTACATGATTTTTTATGTGCAAAAGTTGCAGCACAATAAAGCAAATGAAGACCCGAGTCATGTGCCAAATTCCCCCGGAAGAGAGCTATTTCTTCCTATTGCTGGATTTTGCTAG
>Glyma.17g218300.1.p sequence-type=predicted peptide transcript=Glyma.17g218300.1 locus=Glyma.17g218300 ID=Glyma.17g218300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLLRNPSLYTNPEPCQHLAEYKLKHGFDGYKAIQKLLVISPIGKASVKKPNTKVPRCGFCNGCEGRFYLCLICSSFSCLDHTLLHPQSETGHAVFVDIERAELFCGVCRDQLYDPDFDQVVMSKHSLGVASGVTGNESIGQRLIKRRRLASGVVGLDLQKSKCRVSTKDLREKSCYPVGLRGLNNLGSTCFMNSVLQVLLNAPPFRDYFLSGGHRLEACHHRRTADLMCCLLCDVNAIFSAAYSGDRSPYSPAQFLYSWWQHSANLACYEQQDAHEFFISMLDAIHEKESKTRNGSKGNGDCQCIAHKVFYGLLRSDVTCMACGFTSTTYDPCVDISLNLDTNVSSTEKGKKLTKQNEDGSMSTLFGCLDLFTRPEKLGSDQKLYCRNCRERQDSLKQMSIRKLPLVLSLHVKRFEHSFVKKSSRKIDRYLHFPFSLDMSPYLSSSILRARYGNRIFNFGGDQSDMFSEFEIFAVVTHSGTLESGHYVSFVRLRNQWYRCDDAWITVVDEATVRASQCYMIFYVQKLQHNKANEDPSHVPNSPGRELFLPIAGFC* >Glyma.17g218300.2.p sequence-type=predicted peptide transcript=Glyma.17g218300.2 locus=Glyma.17g218300 ID=Glyma.17g218300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLLRNPSLYTNPEPCQHLAEYKLKHGFDGYKAIQKLLVISPIGKASVKKPNTKVPRCGFCNGCEGRFYLCLICSSFSCLDHTLLHPQSETGHAVFVDIERAELFCGVCRDQLYDPDFDQVVMSKHSLGVASGVTGNESIGQRLIKRRRLASGVVGLDLQKSKCRVSTKDLREKSCYPVGLRGLNNLGSTCFMNSVLQVLLNAPPFRDYFLSGGHRLEACHHRRTADLMCCLLCDVNAIFSAAYSGDRSPYSPAQFLYSWWQHSANLACYEQQDAHEFFISMLDAIHEKESKTRNGSKGNGDCQCIAHKVFYGLLRSDVTCMACGFTSTTYDPCVDISLNLDTNVSSTEKVVTHSGTLESGHYVSFVRLRNQWYRCDDAWITVVDEATVRASQCYMIFYVQKLQHNKANEDPSHVPNSPGRELFLPIAGFC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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