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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26650.1 | AT | K+ transporter 1 | JGI | N/A | IEA |
| GO:0006811 | GO-bp | ion transport | EnsemblGenomes | N/A | IEA |
| GO:0006811 | GO-bp | ion transport | JGI | N/A | IEA |
| GO:0006813 | GO-bp | potassium ion transport | EnsemblGenomes | N/A | IEA |
| GO:0034765 | GO-bp | regulation of ion transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0042391 | GO-bp | regulation of membrane potential | EnsemblGenomes | N/A | IEA |
| GO:0055085 | GO-bp | transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0055085 | GO-bp | transmembrane transport | JGI | N/A | IEA |
| GO:0071805 | GO-bp | potassium ion transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0005887 | GO-cc | integral component of plasma membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | JGI | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0005216 | GO-mf | ion channel activity | EnsemblGenomes | N/A | IEA |
| GO:0005216 | GO-mf | ion channel activity | JGI | N/A | IEA |
| GO:0005244 | GO-mf | voltage-gated ion channel activity | EnsemblGenomes | N/A | IEA |
| GO:0005249 | GO-mf | voltage-gated potassium channel activity | EnsemblGenomes | N/A | IEA |
| GO:0005267 | GO-mf | potassium channel activity | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| KOG0498 | KOG | K+-channel ERG and related proteins, contain PAS/PAC sensor domain | JGI | N/A | IEA |
| PTHR10217 | Panther | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL | JGI | N/A | IEA |
| PTHR10217:SF6 | Panther | JGI | N/A | IEA | |
| PF00023 | PFAM | Ankyrin repeat | JGI | N/A | IEA |
| PF00027 | PFAM | Cyclic nucleotide-binding domain | JGI | N/A | IEA |
| PF00520 | PFAM | Ion transport protein | JGI | N/A | IEA |
| PF11834 | PFAM | Domain of unknown function (DUF3354) | JGI | N/A | IEA |
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Glyma.17g207900 not represented in the dataset |
Glyma.17g207900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g126500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g31250 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g207900.1 sequence-type=CDS polypeptide=Glyma.17g207900.1.p locus=Glyma.17g207900 ID=Glyma.17g207900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGATGTTTGGAATGTGTGGTGGTAGCGACGATGATAATCACAGAGATGATGAAGACAAAAGCCCGATTGGGGCAAGAGAAGATGGCAGCCAATACAGCCTCACAGGAGTTCTTCTTCCGTCTCTCGGGGCCACAGCTATTCGCAATGGCAGCGGTAGACCAAAGTTTCGCCAATACATTGTCTCACCATATAATCGTCATTACAAACTATGGAACACGTTTCTTCTGATATTGGTTTTCTACACTGCTTGGATGTGTCCATTTGAATTTGGTTTCCTTGAGAAATCAAATATTGCAGTGGCTATAACGGACAATGTTGTAAATGTGTTTTTTGCCATCGACATCGTGCTCACATTCTTCGTTGCCTACCTTGATAAGTCAACATATTTGCTAGTTGATGACCACAAACTCATTGCTTTGAGATATGCTAAATCCTGGTTGATCTTGGATGTCATTGCAACCATACCTTATGAAGTTGTTATTTTAATTTTGCCACCTTCTCTTCAGATATATAGTTACTTCAATTTTCTTCGCCTTTGGCGCCTCCATCGAGTGAGTGCCATGTTTGCAAGATTAGAAAAGGACAGGAACTATAACTACTTTTTGGTGCGTTGTTGCAAGCTTACATGTGTTACTTTATTCTCAGTGCATGCTGCTGCATGCTTTTTCTATTTTCTTGCTGCACGGGATAATCCAGAATCTACATGGCTTGGACTTGTTCCTGATGCCATTGACCAGAATCTATGGGGAAAGTATGTAGTAGCAATATATTGGTCCATAGTGACCCTTGTATCAGTTGGTTATGGTGATCTACATCCTGTAAATACAAAAGAAATGGTATTTGACATTTTTTATATGCTCTTTAATCTTGGACTCACCTCATATCTGATAGGCAACATGACCAATATGGTAGTCCACTGGACAGAAAGAACTAAGAGATATAGAGACACTGTCCAATCTGCCTCAAATTTTGCCCATAGGAACCACCTGCCAAATCGTTTGCAAGAACAAATATTTGCTCATTTGCTTATGAAGTACAGAACTGATTTAGAAGGACTACAACAGCAAGAGATCATTGATTCTCTTCCAAAAGCCATTCATTCTAGCATCTCACACTACCTATTCTTTTCACTTGTTGACAAAGTGTACTTGTTTCATGGAGTATCAAATGACCTACTTTTTCAACTGGTCACAGAGATGAAGGCTGAGTATTTTCCTCCGAAGGATGATGTGATTTTGCAAAATGAAGCACCAACAGACTTCTATATATTCGTTACAGGAGCTGCAGATCTTATCGTTCATAAGAATGGAATAGAGCAGGTTGTTGGCGAGGCAAAGTCTGGAGATGTAGTTGGGGAAATAGGAGTGTTATGCTATAGGCCACAATTGTTTACGGTTCGAACCAAGCGGTTGAGCCAGATCTTGCGTTTGAGTCGAACCTCATTTCTGAATCTTTCTCATTCAAATGTTGAAGATGGAACAATGATCATGAACAATTTTCTTCAAAATTTACATGAATCAGAGGATCCACTGATGAAAGAAATTTTGGCAGAAACAGAAGCAATGTTAGCCAGAGGAAAAATGGATTTGCCTATTAGTTTATTGTTTGCAGCTAGCAGAGGTGATGATATATTGTTGCATCAACTGCTAAAGAAGGGTTCAGATCCAAATGAACCAGATAAGGATGGAAAGACAGCATTGCATATTGCAGCTTCCAAAGGCAAAGACCATTGTGTAGCTTTGCTTCTAGAACATGGGGCTAATCCCAACATCAAAGACTTAGATGGAAATGTCCCGCTATGGGAAGCAATCAAGGGTGGGCATGATTCTGTGATGAAGCTTCTTATAGACAATGGTGCAGACATATCATCTGGCGATGTAGGTTCTCTTGCATGCATTTCTGTTGCGCAAAATAACTTAGAATTACTCAAGGATATTGTTCAATGTGGAGGAGACGTGACACGGTCCGCAAGCAACGGAAGCACAGCACTCCATGCTGCAGTGTGTGAAGGAAATGCTGAAATAGTGAAGTTCCTTCTAGAGCATGGAGCAGACATTGATAAGCAAGATGATAGTGGCTTGACTCCAAGGATTTTAGCAGATCAACAATGCCACGAAGAAATAATAAACATATTCAAGAAAGTTGGACAAAACAAAGCACCACATGGTATTCCTACAACGTCCTTTGTTGCAAGGTGTCAAAGTAAACCCACTATACTAGGCATTCATCAAGGAAGCAAGCCACCTAATGAAGAAGTGACATGGTTTGATAATCATCAAAGAAGAAAGATGAGCCCTTTCCACAATTCCTTTTTTGGGATAATGTCAACGGAAAATTATGATAAAAAAGATTCCACATCTTCATCTAAAACCAGTCACACTAGTAGGGAAGAATTACCAGCCAGAGTAACTCTTAGTTGTCCAGAGAAAGGTGAACATGGCAAAAAGCTTGTTTTTCTGCCAAAATCCCTTGAAGAATTACTACGTATTGGTGCTGAAAAGTTTGATTTCTCTCCCACCAAAATATTGAGCAAAGAAAGAGCTGAAATTGAAGACATATATGTTATAAGAGATGGTGATCTTCTTATTCTTGAATAG
>Glyma.17g207900.1.p sequence-type=predicted peptide transcript=Glyma.17g207900.1 locus=Glyma.17g207900 ID=Glyma.17g207900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKMFGMCGGSDDDNHRDDEDKSPIGAREDGSQYSLTGVLLPSLGATAIRNGSGRPKFRQYIVSPYNRHYKLWNTFLLILVFYTAWMCPFEFGFLEKSNIAVAITDNVVNVFFAIDIVLTFFVAYLDKSTYLLVDDHKLIALRYAKSWLILDVIATIPYEVVILILPPSLQIYSYFNFLRLWRLHRVSAMFARLEKDRNYNYFLVRCCKLTCVTLFSVHAAACFFYFLAARDNPESTWLGLVPDAIDQNLWGKYVVAIYWSIVTLVSVGYGDLHPVNTKEMVFDIFYMLFNLGLTSYLIGNMTNMVVHWTERTKRYRDTVQSASNFAHRNHLPNRLQEQIFAHLLMKYRTDLEGLQQQEIIDSLPKAIHSSISHYLFFSLVDKVYLFHGVSNDLLFQLVTEMKAEYFPPKDDVILQNEAPTDFYIFVTGAADLIVHKNGIEQVVGEAKSGDVVGEIGVLCYRPQLFTVRTKRLSQILRLSRTSFLNLSHSNVEDGTMIMNNFLQNLHESEDPLMKEILAETEAMLARGKMDLPISLLFAASRGDDILLHQLLKKGSDPNEPDKDGKTALHIAASKGKDHCVALLLEHGANPNIKDLDGNVPLWEAIKGGHDSVMKLLIDNGADISSGDVGSLACISVAQNNLELLKDIVQCGGDVTRSASNGSTALHAAVCEGNAEIVKFLLEHGADIDKQDDSGLTPRILADQQCHEEIINIFKKVGQNKAPHGIPTTSFVARCQSKPTILGIHQGSKPPNEEVTWFDNHQRRKMSPFHNSFFGIMSTENYDKKDSTSSSKTSHTSREELPARVTLSCPEKGEHGKKLVFLPKSLEELLRIGAEKFDFSPTKILSKERAEIEDIYVIRDGDLLILE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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