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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G25870.1 | AT | haloacid dehalogenase-like hydrolase family protein | JGI | N/A | IEA |
| GO:0006364 | GO-bp | rRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0006364 | GO-bp | rRNA processing | JGI | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0004222 | GO-mf | metalloendopeptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0004222 | GO-mf | metalloendopeptidase activity | JGI | N/A | IEA |
| PF02130 | PFAM | Uncharacterized protein family UPF0054 | JGI | N/A | IEA |
| PF08282 | PFAM | haloacid dehalogenase-like hydrolase | JGI | N/A | IEA |
| GLUCOSE1PMETAB-PWY | SoyCyc9 | glucose and glucose-1-phosphate degradation | Plant Metabolic Network | ISS | |
| PWY-3881 | SoyCyc9 | mannitol biosynthesis | Plant Metabolic Network | ISS | |
| PWY-7204 | SoyCyc9 | pyridoxal 5'-phosphate salvage II (plants) | Plant Metabolic Network | ISS | |
| PWY-882 | SoyCyc9 | L-ascorbate biosynthesis I (L-galactose pathway) | Plant Metabolic Network | ISS | |
| PWY4FS-11 | SoyCyc9 | L-ascorbate biosynthesis II (L-gulose pathway) | Plant Metabolic Network | ISS | |
| GN7V-66619 | SoyCyc9-rxn | pyridoxal phosphatase | Plant Metabolic Network | ISS |
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Glyma.17g192300 not represented in the dataset |
Glyma.17g192300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g26630 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g192300.1 sequence-type=CDS polypeptide=Glyma.17g192300.1.p locus=Glyma.17g192300 ID=Glyma.17g192300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCTTCTTCCCCGTTTCTCCCACCTCCTCCGCCACCCTCCTCCTCCTCTCCACGCCATGGCGCGTGCCGTCACGTGCGCCACTCAGCCCCCTCATTTCCACCGCTCATCCGGCATCGCTACCTCTCGCTGCGGCGTTTCTCTGCCCTCCAAATCCTCGCTTTTCGGCCGCACCTTTCACGCCCTCGCGCGGTGCGCGGGCGAAGAAGCAGCGACGCGGCGGCGGCCAGTGGCGGGAGTCCGCACCGAGCAGAGGGAGTACCGGAAGGCGAGGAGAAGAGCGCCGCCCAAGAGCAAAGGCAAGGAGCTTCAACTCTGCGTCGAGATTTGCATCGAAGAAGATTTGCCTGACGATCCTGAAATTTTGAGCATTGCAGAGTTGCTTCGACTAAATGTTCCAATGGCGATGAAACTAGCGTTTGATGGTTTGAAAGGTTTGGGGTATAAAACACGAGACACTGCTATAAGAGATGTTGGTGGGTTTGATAGTGTTGAGTTATCAGTACTTCTTTGCAATGATGAGTTTATACAAAAACTTAATAAGGAATGGAGAAATGAAGATCATGCCACGGATGTTCTGTCAATGTCGCAACATGTACCTGGGCTCAAGATTCCTATTCTTATGTTGGGTGATATTATAATTTCGGTTGAGACAGCGGCAAGACAAGCCGAGGAAAGAGGACATACTCTTCTTGATGAGATCCGAATCCTCATGGTTCATGGCTTGTTACATCTTTTGGGATTTGATCATGAAATAAGTGAAGAGGCTGAAGTAGAAATGGAAAGAGAGGAGGACATCCTTTTAAAGAGTCTTGATTGGAAAGGAAAAGGGCTAATAAAGAGTGCATGTGATGCTGAAACAAATTCAAATTTTTACCCAGACAGTTCAGATGACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGCTATATCTTCTGTGATATGGATGGAACATTGCTGAACAGCAAAAGTCAAATTTCTTCTACAACTGCCAATGCTTTGAGAGAGGCGACATCCAGGGGTGTGAAAATTGTGATAGCTACTGGAAAAGCTCGTCCAGCTGTGATAGACATTTTTAAGATGGTAGATTTAGCTGGAAAAGATGGCATTGTTTCAGAATTTTCTCCTGGGGTTTTCTTACAGGGATTGCTTGTTTATGGAAGACAAGGTCGGGAAATATTTAGGAGCAACTTAGATCCAAATGTCTGTAGAGAGGCTTGTCTTTACTCTTTGGAGAATAAGGTTCCACTTATTGCATTTTGTGAAGGGCGCTGCTTAACCCTATTTCATGATCCATTAGTTGATTCACTGCATACAATATACCATGAACCAAAGGCTGAGGTCATGCCTTCTGTTGAACATCTATTAGCTTCTGCTGACATACAGAAAATGATTTTCTTAGACACTGACCAGAGGGTGGAATGTTACCTTGCGGCCGTACTGGTCAGATGCAACAAAAGGTCGTGCCTCTGTTGTTCAAGCTGTGCCATACATGCTGGAAATTGTACCTGTGGGAACATCGAAAGGGAATGGAGTAAAAGTGCTGCTAGATCATTTTGGGGTTACTGCTAA
>Glyma.17g192300.1.p sequence-type=predicted peptide transcript=Glyma.17g192300.1 locus=Glyma.17g192300 ID=Glyma.17g192300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLLPRFSHLLRHPPPPLHAMARAVTCATQPPHFHRSSGIATSRCGVSLPSKSSLFGRTFHALARCAGEEAATRRRPVAGVRTEQREYRKARRRAPPKSKGKELQLCVEICIEEDLPDDPEILSIAELLRLNVPMAMKLAFDGLKGLGYKTRDTAIRDVGGFDSVELSVLLCNDEFIQKLNKEWRNEDHATDVLSMSQHVPGLKIPILMLGDIIISVETAARQAEERGHTLLDEIRILMVHGLLHLLGFDHEISEEAEVEMEREEDILLKSLDWKGKGLIKSACDAETNSNFYPDSSDDRKKEGSLRFYKPKFSYIFCDMDGTLLNSKSQISSTTANALREATSRGVKIVIATGKARPAVIDIFKMVDLAGKDGIVSEFSPGVFLQGLLVYGRQGREIFRSNLDPNVCREACLYSLENKVPLIAFCEGRCLTLFHDPLVDSLHTIYHEPKAEVMPSVEHLLASADIQKMIFLDTDQRVECYLAAVLVRCNKRSCLCCSSCAIHAGNCTCGNIEREWSKSAARSFWGYC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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