SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.17g190400

Feature Type:gene_model
Chromosome:Gm17
Start:26574061
stop:26577489
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g190400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G25752.1AT rhomboid-like protein 11 JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0080140GO-bp regulation of jasmonic acid metabolic process EnsemblGenomesN/AIEA
GO:0009706GO-cc chloroplast inner membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0004252GO-mf serine-type endopeptidase activity EnsemblGenomesN/AIEA
GO:0004252GO-mf serine-type endopeptidase activity JGI N/AIEA
GO:0019904GO-mf protein domain specific binding EnsemblGenomesN/AIEA
PTHR22936Panther RHOMBOID-RELATED JGI N/AIEA
PF01694PFAM Rhomboid family JGI N/AIEA

Expression Patterns of Glyma.17g190400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g190400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g25950 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g190400
>Glyma.17g190400.1 sequence-type=CDS polypeptide=Glyma.17g190400.1.p locus=Glyma.17g190400 ID=Glyma.17g190400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCAGCAACTTGGAGTTCCATTTAAGTTATCATGCAAACCCTCTCACATTCACGCTCTTAAACCCTTTCACTCTCTCCCTCCCCTTCGCACCTTCACCCCCAAACCTTCTCTTAATGCCAAATCCCATCATCATCATCATCCTTTATTAACGCTTCTTCGTTCCCACCGCACTCTCGCACCCTGCTGCAACTCCAACAAATCAGATATAATGTCACAATTGGAGCTTGGGAAACCGGAGCAAAAGGGTAAACCGGAGAAGCGAGTAAATGGTATATTCTGGATCATTCTCCTCAACATTGCCATATTCGTCGCTGACCACTTTTTTCGGGTTAATGGGATCAAGGCTTTATACTTGTACCACAATTGGCCTTCTTGGTACCAGTTTGTCACAGCTACATTTTGTCATGCTAATTGGAAGCATCTTTCTAGCAACCTTTTCTTCTTGTACATTTTTGGAAAGCTTGTTGAAGAAGAGGAAGGGAACTTTGCTTTGTGGCTTTCTTACATTCTTACTGGTGTAGGAGCCAACCTTGTTTCATGGTTGGTTTTACCAAGAAATACGGTTTCTGTTGGAGCTTCTGGTGCTGTTTTCGGGTTATTTTCTATCAGTGTCCTTGTAAAGATGTCCTGGGATTGGAGGAAGATCCTTGAAGTGCTTATATTGGGTCAGTTTGTTATAGAGAAGGTCATGGAAGCAGCCCAAGCTTCAACATCATTGTCAGGCCGAGGAGGCTACGCATTGCAAAGTGTAAATCACATTGCACATCTTTCTGGTGCTCTTGTTGGTGTGCTTTTGGTTTGGCTCCTTAGCAAAGTTCCTTCAGATCCTTCTGACCAATAA
Predicted protein sequences of Glyma.17g190400
>Glyma.17g190400.1.p sequence-type=predicted peptide transcript=Glyma.17g190400.1 locus=Glyma.17g190400 ID=Glyma.17g190400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAQQLGVPFKLSCKPSHIHALKPFHSLPPLRTFTPKPSLNAKSHHHHHPLLTLLRSHRTLAPCCNSNKSDIMSQLELGKPEQKGKPEKRVNGIFWIILLNIAIFVADHFFRVNGIKALYLYHNWPSWYQFVTATFCHANWKHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANLVSWLVLPRNTVSVGASGAVFGLFSISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTSLSGRGGYALQSVNHIAHLSGALVGVLLVWLLSKVPSDPSDQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo