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Report for Sequence Feature Glyma.17g187600

Feature Type:gene_model
Chromosome:Gm17
Start:24169536
stop:24170984
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g187600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G54410.1AT dehydrin family protein JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA

Proteins Associated with Glyma.17g187600
LocusGene SymbolProtein Name
SRC1 src1 protein

Expression Patterns of Glyma.17g187600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g187600 not represented in the dataset
Glyma.17g187600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g187600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Transcripts of Glyma.17g187600
>Glyma.17g187600.2 sequence-type=transcript locus=Glyma.17g187600 ID=Glyma.17g187600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTTCAATTAAACCAAAGCAAAAGGCCATATAATTTTTTTTTATTTGAAATAATGTCCGGGATCATCCACAAGATTGAGGAGACCCTCCATGTGGGAGGGCACAAGAAAGAGGAGCACAAAGGAGAACACCATGGTGAGCACAAAGGTGAACACAAAGGAGAACAACACCATGGGGAGCACAAGGAGGGACTTGTGGATAAGATCAAGGACAAGATCCATGGTGATGGCCATGACAAGGGTGagaaaaagaagaagaaggacaagaagaagaaggagCATGGACATGACCATCATGGTCATAGCAGCAGCAGTGACAGTGATTAGATCTTATATGTTAAGGTGTACGGTACGATGGTAGTGAGGAGCCAGAATCCCTCTTCCTGCTTTATGATATAATACAAATAAAATAGCGATTCCGGAAATCATGTCTGTAGCTGCTCTTTTTATTTATGTGATAAATGTAAAACGCTTTGGTTTGGCTTGGCCGTTGTGCATTAGGTTGAAAAAATAAATGTTATAATTACTCAGAATCTCAGATCTTTCTCATACTTTGCCCCTGATTATAAGTCTCTCAAATTTCAACTAATTCATCTTACTTTAAAAAAAATGTTAATTAATTAATCATATTAAATATATGTTAATTGTTTATATTATCATTTAAAAATTACTTTTTCTTATTTCTATCCATTTAATTATTTTTCATTTATGTTTAGAGTAAGAATAATGAAGTAAATATATGTAAAGATAAATAATTAATACATCTAAAAATTAGAAAATAATCTAATAAATTTTTTATAAAAAGTCTTATAATTATAGATGGAGAATAATTTTTTACTCAATATTATCGTTGCCGTTAGATGTTTGACAACCTTCACATTCATTCTCACTATTATGTTCACGAGTTTTTGACCCGTGCATTGCACGAGATAAATAATTTG
Coding sequences of Glyma.17g187600
>Glyma.17g187600.1 sequence-type=CDS polypeptide=Glyma.17g187600.1.p locus=Glyma.17g187600 ID=Glyma.17g187600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCGGGATCATCCACAAGATTGAGGAGACCCTCCATGTGGGAGGGCACAAGAAAGAGGAGCACAAAGGAGAACACCATGGTGAGCACAAAGGTGAACACAAAGGAGAACACCATGGTGAGCACAAAGGTGAACACAAAGGAGAACAACACCATGGGGAGCACAAGGAGGGACTTGTGGATAAGATCAAGGACAAGATCCATGGTGATGGCCATGACAAGGGTGAGAAAAAGAAGAAGAAGGACAAGAAGAAGAAGGAGCATGGACATGACCATCATGGTCATAGCAGCAGCAGTGACAGTGATTAG

>Glyma.17g187600.2 sequence-type=CDS polypeptide=Glyma.17g187600.2.p locus=Glyma.17g187600 ID=Glyma.17g187600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCGGGATCATCCACAAGATTGAGGAGACCCTCCATGTGGGAGGGCACAAGAAAGAGGAGCACAAAGGAGAACACCATGGTGAGCACAAAGGTGAACACAAAGGAGAACAACACCATGGGGAGCACAAGGAGGGACTTGTGGATAAGATCAAGGACAAGATCCATGGTGATGGCCATGACAAGGGTGAGAAAAAGAAGAAGAAGGACAAGAAGAAGAAGGAGCATGGACATGACCATCATGGTCATAGCAGCAGCAGTGACAGTGATTAG
Predicted protein sequences of Glyma.17g187600
>Glyma.17g187600.1.p sequence-type=predicted peptide transcript=Glyma.17g187600.1 locus=Glyma.17g187600 ID=Glyma.17g187600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGIIHKIEETLHVGGHKKEEHKGEHHGEHKGEHKGEHHGEHKGEHKGEQHHGEHKEGLVDKIKDKIHGDGHDKGEKKKKKDKKKKEHGHDHHGHSSSSDSD*

>Glyma.17g187600.2.p sequence-type=predicted peptide transcript=Glyma.17g187600.2 locus=Glyma.17g187600 ID=Glyma.17g187600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGIIHKIEETLHVGGHKKEEHKGEHHGEHKGEHKGEQHHGEHKEGLVDKIKDKIHGDGHDKGEKKKKKDKKKKEHGHDHHGHSSSSDSD*






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