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Report for Sequence Feature Glyma.17g186400

Feature Type:gene_model
Chromosome:Gm17
Start:23621191
stop:23621397
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
ATCG00710.1AT photosystem II reaction center protein H JGI N/AIEA
GO:0015979GO-bp photosynthesis EnsemblGenomesN/AIEA
GO:0015979GO-bp photosynthesis JGI N/AIEA
GO:0050821GO-bp protein stabilization EnsemblGenomesN/AIEA
GO:0050821GO-bp protein stabilization JGI N/AIEA
GO:0009523GO-cc photosystem II EnsemblGenomesN/AIEA
GO:0009523GO-cc photosystem II JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0042301GO-mf phosphate ion binding EnsemblGenomesN/AIEA
GO:0042301GO-mf phosphate ion binding JGI N/AIEA
PF00737PFAM Photosystem II 10 kDa phosphoprotein JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g186400 not represented in the dataset

Glyma.17g186400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Corresponding NameAnnotation VersionEvidenceComments
Glyma17g23881 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.17g186400.1 sequence-type=CDS polypeptide=Glyma.17g186400.1.p locus=Glyma.17g186400 ID=Glyma.17g186400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACGCAAACCGTTGAAGATAATTCTAGATCTGGTCCAAGACGAACTGTTGTAGGTGATTTATTGAAACCATTAAATTTAGAATATGGTAAAGTAGCTCCGGGGTGGGGAACTACTCCCTTGATGGGTGTTGCAATGGCTATATTTGCGATATTTCTATCTATTATTTTGGGTAGGAAGTGTAGTCGCCAAAAGGCGAGTTGA

>Glyma.17g186400.1.p sequence-type=predicted peptide transcript=Glyma.17g186400.1 locus=Glyma.17g186400 ID=Glyma.17g186400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATQTVEDNSRSGPRRTVVGDLLKPLNLEYGKVAPGWGTTPLMGVAMAIFAIFLSIILGRKCSRQKAS*







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