SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.17g183400

Feature Type:gene_model
Chromosome:Gm17
Start:23059487
stop:23089019
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.17g183400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G29940.1AT NRPA2 JGI N/AIEA
2.7.7.6EC DNA-directed RNA polymerase JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003899GO-mf DNA-directed 5'-3' RNA polymerase activity JGI N/AIEA
GO:0032549GO-mf ribonucleoside binding JGI N/AIEA
K03002KEGG Transcription machinery JGI N/AIEA
PTHR20856PantherFam DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 JGI N/AIEA
PTHR20856:SF5PantherFam DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2 JGI N/AIEA
PF00562Pfam RNA polymerase Rpb2, domain 6 JGI N/AIEA
PF04560Pfam RNA polymerase Rpb2, domain 7 JGI N/AIEA
PF04561Pfam RNA polymerase Rpb2, domain 2 JGI N/AIEA
PF04563Pfam RNA polymerase beta subunit JGI N/AIEA
PF04565Pfam RNA polymerase Rpb2, domain 3 JGI N/AIEA
PF06883Pfam RNA polymerase I, Rpa2 specific domain JGI N/AIEA

Gene model name correspondences to Glyma.17g183400 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g23500 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g183400
>Glyma.17g183400.1 sequence-type=CDS polypeptide=Glyma.17g183400.1.p locus=Glyma.17g183400 id=Glyma.17g183400.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGTGGTTAAACAGGGTTCGATTCCGGACTTTGAGGCGCTGCGAGAGCTGTTCAAGCATCACATAGAGTCCTTTGATTACATGGCCGATGCTGGATTGGAAACCATGCTCAGACACATCAAACCCATCGAAGTTTTCGACGATTTCACTTCCACAAAGCTTAGAATTTGGTTGGATAATCCGGTGCTGTATCCGCCGCAGAAGGAGCGGATTTCGAGGACAATGCGGGAGGCTTTACTTCCGTTTGAATGCAGACAGGCAAAGATTTCTTATGCAGGGAAGATTACTATAGATGTTTGCTTTCAATATAATGATGGGCCTATTATTAGAGAAAATATAAATTTTGGGCAGTTTCCCATAATGCTGCAGTCAAAGTTATGCAACTTGAGAGGTGCTGATCCCCAGAAGCTTGTGTCCTACAGGGAAGAAGCATCGGAAATGGGTGGTTACTTCATCTTGAATGGTCTTGAGAGAGTTATCCGACTGTTAATTTTGCCAAAACGGAATCATCCAATGAGTATGGTGCGGAATTCATTTAGTGACCGACGGGAAGGATATACAGATAAAGCAATTGTAATAAGGTGTGTAAGAGCTGACCAATCCTCATTATCAGTAAGATTGTATTACCTTCGTAATGGGAGCGCAAGACTTGGTTTCTGGTTAAGAGGAAGGGAGTACTTGCTTCCTGTGGGCATTATTTTGAAGGCCCTCATTGACACAACTGACCGTGAAATTTATGTAAATTTGACAAGCTGCTATAATGAGAAGTATGAAAAGGGAAAAGGTGCTGTTGGGACCCAGCTTGTTGGTGAAAGGGCAAAAATAATCTTAGATGAACTTCGAGATCTGTCTCTTTTCACTCGTCTTCAATGTCTAGAATATATTGGAGAGCACTTCCAACCTGTTATCACTGAACTTAAGAATGACAGTTATCCTATTGTGGCTGAAGCTGTTTTGAAGGACTGCATATTAGTTCATCTGGATAACAATTTTGACAAATTCAATCTTCTCATCTTCATGTTGCAGAAACTTTTCTCACTTATAGATCAAACATCGGTGCCGGACAACCCTGATTCCTTGCAAAATCATGAGGTTTTACTCCCTGGCCACCTGATTACACTTTATCTCAAGGAAAAACTGGAAGATTGGCTGCAAAAGGGAAAAAGGCTTCTTCTGGATGAGATTGATAAAAAAAGCAAGAAATTTGATTTCAGTGACATTGTTCAGGTTAAGAAAGTCATGGATAAAAATTCACCAAAGCAAGTCAGTACAGCAGTTGAAAATATGTTGAAAACTGGAAGATTGGTTACACAAACGGGTCTAGATCTGCAGCAGAGGGCAGGTTATACAGTTCAGGCTGAAAGGCTAAATTTTTTACGTTTTGTATCACATTTTCGTGCCGTTCATCGAGGGGCCTCATTTGCAGGACTTCGTACCACAACTGTGCGGAAGCTGTTACCTGAATCTTGGGGTTTTCTTTGCCCTGTGCACACACCTGATGGAGAGCCCTGTGGATTGTTGAATCATATGACTTGCACTAGTAGGATAACGTCATTCTTTGATTCTCAAGGAAACGTGAAAGATTATTTTAAAATAAAAATGTCCATCCTAAATGTTTTATTGGAGGTTGGGATGACACCATCATTGCCAAAGATATTTCTTCCTGGCCCACCTGAAGCTCTTACTGTTCTCTTAGATGGTTGTGTTGTTGGTTGTATAGCTTCCAGTGAAGCAGAGAAAGTTGTGGCTCACATACGAGAATTAAAAGTGTCATCTGCCGCAGTGATTCCTGATGATATGGAAGTGGGATATGTTCCTTTGAGCATGGGGGGGGCCTATCCTGGTCTTTACCTGTGCACATCCCCTTCAAGATTTGTTCGGCCAGTAAGAAATATATCAATTCCTTCCAATGGAAGTGAAAACATTGAATTCATTGGGCCATTTGAGCAGGTTTTTATGGAAATTAGATGTCCTGATGGCGGAGATGGTGGAAGAAAAAGTTCATTTCCTGCAACTCATGAAGAAATTCATCCAACAGTAATGCTTAGTGTAGTTGCTAATCTCACACCATGGTCAGATCATAATCAGAGTCCACGAAATATGTACCAGTGTCAGATGGCAAAGCAAACAATGGCATTTTCTTCACAAACTATTCAACATCGTGCAGATCAAAAGTTATATCATCTTCAGACTCCTCAGACTCCCATTGTACGCACTAGTACATATACTAAATACAACATTGATGAATTTCCAACAGGCACAAATGCTATAGTCGCAGTTCTGGCATATACAGGATATGATATGGAGGATGCCATGATTCTAAATAAGTCATCAGTGGAACGTGGAATGTTTCATGGACAAATATATCAGACAGAAACTATTGACTTAACTGAACAAGGGGGAAGGTTAGACCGATCTTCAAGAATGTTCAGAAAAAGTAATTTAGAGAAATCAGCTTGTCCCTCAATCGATTCAGATGGACTTCCACATGTTGGTCAGATGATACGGCCAGATGAACCCTATTGTAGCATTTATAATGAAGTAACAAGTTCCATACACACCTTAAAAAGAAAGGGTTCTGAAGCTGTTTATGTTGACTATGTTGCTGTTGATGTCAAAAACAAGAAGCACCTTCAAAAGGTTAACATACGCTTTCGACATCCTCGGAACCCTGTTATTGGTGATAAATTTAGCAGTAGACATGGGCAGAAAGGCGTTTGCTCTCAGTTGTGGCCAGACGTTGATATGCCATTTTCTGGAAATACTGGGATGCGCCCAGATCTCATTATCAATCCTCATGCATTTCCTTCCAGGATGACAATTGCTATGCTTTTGGAATCTGTTGCTGCTAAGGGAGGTAGCTTGCGTGGAGAATTTGTAGATGCAACTCCATTTCGAAGTTCAGTGAAGAAAGACAGTGGGGAGTCTGATTCAATGTCAGGTTCAATTGTCGATGATCTTGGCCTTCTGCTAAGAGAAAAAGGATTTAATTATCACGGTTTGGAGGTTCTATATAGTGGTGTTTATGGAACGGAACTAACATGTGAGATATTTATTGGACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAGGTTCGATCTACTGGCACAATTGACCAGGTCACCCGGCAGCCAATAAAAGGACGAAAGCGTGGTGGGGGAATTCGATTTGGAGAAATGGAACGCGACTCTCTGCTTGCACATGGAGCTGCATATCTTCTGCATGATAGGTTGCACACCTGTTCTGATTATCACATTGCTGATGTTTGTTCACTTTGTGGAAGCATGCTTACAACAACATTCACCCAACCTCAAAAGCGGCCAGTTCGGGAGATTGGTGGTCTACCCCCGGGAAGAGCTCCGAAAAAGGTCACTTGTCATGCTTGCCAAACGAGTAAGGGCATGGAGACAGTTGCCATGCCCTATGTATTTAGATATTTGGCTGCCGAGTTAGCAGCAATGAATATAAAAATGACTCTTAAGCTCAGTGATGGAGCTGGAGCCGGAGCCTGA

>Glyma.17g183400.2 sequence-type=CDS polypeptide=Glyma.17g183400.2.p locus=Glyma.17g183400 id=Glyma.17g183400.2.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGTGGTTAAACAGGGTTCGATTCCGGACTTTGAGGCGCTGCGAGAGCTGTTCAAGCATCACATAGAGTCCTTTGATTACATGGCCGATGCTGGATTGGAAACCATGCTCAGACACATCAAACCCATCGAAGTTTTCGACGATTTCACTTCCACAAAGCTTAGAATTTGGTTGGATAATCCGGTGCTGTATCCGCCGCAGAAGGAGCGGATTTCGAGGACAATGCGGGAGGCTTTACTTCCGTTTGAATGCAGACAGGCAAAGATTTCTTATGCAGGGAAGATTACTATAGATGTTTGCTTTCAATATAATGATGGGCCTATTATTAGAGAAAATATAAATTTTGGGCAGTTTCCCATAATGCTGCAGTCAAAGTTATGCAACTTGAGAGGTGCTGATCCCCAGAAGCTTGTGTCCTACAGGGAAGAAGCATCGGAAATGGGTGGTTACTTCATCTTGAATGGTCTTGAGAGAGTTATCCGACTGTTAATTTTGCCAAAACGGAATCATCCAATGAGTATGGTGCGGAATTCATTTAGTGACCGACGGGAAGGATATACAGATAAAGCAATTGTAATAAGGTGTGTAAGAGCTGACCAATCCTCATTATCAGTAAGATTGTATTACCTTCGTAATGGGAGCGCAAGACTTGGTTTCTGGTTAAGAGGAAGGGAGTACTTGCTTCCTGTGGGCATTATTTTGAAGGTGGCTGAAGCTGTTTTGAAGGACTGCATATTAGTTCATCTGGATAACAATTTTGACAAATTCAATCTTCTCATCTTCATGTTGCAGAAACTTTTCTCACTTATAGATCAAACATCGGTGCCGGACAACCCTGATTCCTTGCAAAATCATGAGGTTTTACTCCCTGGCCACCTGATTACACTTTATCTCAAGGAAAAACTGGAAGATTGGCTGCAAAAGGGAAAAAGGCTTCTTCTGGATGAGATTGATAAAAAAAGCAAGAAATTTGATTTCAGTGACATTGTTCAGGTTAAGAAAGTCATGGATAAAAATTCACCAAAGCAAGTCAGTACAGCAGTTGAAAATATGTTGAAAACTGGAAGATTGGTTACACAAACGGGTCTAGATCTGCAGCAGAGGGCAGGTTATACAGTTCAGGCTGAAAGGCTAAATTTTTTACGTTTTGTATCACATTTTCGTGCCGTTCATCGAGGGGCCTCATTTGCAGGACTTCGTACCACAACTGTGCGGAAGCTGTTACCTGAATCTTGGGGTTTTCTTTGCCCTGTGCACACACCTGATGGAGAGCCCTGTGGATTGTTGAATCATATGACTTGCACTAGTAGGATAACGTCATTCTTTGATTCTCAAGGAAACGTGAAAGATTATTTTAAAATAAAAATGTCCATCCTAAATGTTTTATTGGAGGTTGGGATGACACCATCATTGCCAAAGATATTTCTTCCTGGCCCACCTGAAGCTCTTACTGTTCTCTTAGATGGTTGTGTTGTTGGTTGTATAGCTTCCAGTGAAGCAGAGAAAGTTGTGGCTCACATACGAGAATTAAAAGTGTCATCTGCCGCAGTGATTCCTGATGATATGGAAGTGGGATATGTTCCTTTGAGCATGGGGGGGGCCTATCCTGGTCTTTACCTGTGCACATCCCCTTCAAGATTTGTTCGGCCAGTAAGAAATATATCAATTCCTTCCAATGGAAGTGAAAACATTGAATTCATTGGGCCATTTGAGCAGGTTTTTATGGAAATTAGATGTCCTGATGGCGGAGATGGTGGAAGAAAAAGTTCATTTCCTGCAACTCATGAAGAAATTCATCCAACAGTAATGCTTAGTGTAGTTGCTAATCTCACACCATGGTCAGATCATAATCAGAGTCCACGAAATATGTACCAGTGTCAGATGGCAAAGCAAACAATGGCATTTTCTTCACAAACTATTCAACATCGTGCAGATCAAAAGTTATATCATCTTCAGACTCCTCAGACTCCCATTGTACGCACTAGTACATATACTAAATACAACATTGATGAATTTCCAACAGGCACAAATGCTATAGTCGCAGTTCTGGCATATACAGGATATGATATGGAGGATGCCATGATTCTAAATAAGTCATCAGTGGAACGTGGAATGTTTCATGGACAAATATATCAGACAGAAACTATTGACTTAACTGAACAAGGGGGAAGGTTAGACCGATCTTCAAGAATGTTCAGAAAAAGTAATTTAGAGAAATCAGCTTGTCCCTCAATCGATTCAGATGGACTTCCACATGTTGGTCAGATGATACGGCCAGATGAACCCTATTGTAGCATTTATAATGAAGTAACAAGTTCCATACACACCTTAAAAAGAAAGGGTTCTGAAGCTGTTTATGTTGACTATGTTGCTGTTGATGTCAAAAACAAGAAGCACCTTCAAAAGGTTAACATACGCTTTCGACATCCTCGGAACCCTGTTATTGGTGATAAATTTAGCAGTAGACATGGGCAGAAAGGCGTTTGCTCTCAGTTGTGGCCAGACGTTGATATGCCATTTTCTGGAAATACTGGGATGCGCCCAGATCTCATTATCAATCCTCATGCATTTCCTTCCAGGATGACAATTGCTATGCTTTTGGAATCTGTTGCTGCTAAGGGAGGTAGCTTGCGTGGAGAATTTGTAGATGCAACTCCATTTCGAAGTTCAGTGAAGAAAGACAGTGGGGAGTCTGATTCAATGTCAGGTTCAATTGTCGATGATCTTGGCCTTCTGCTAAGAGAAAAAGGATTTAATTATCACGGTTTGGAGGTTCTATATAGTGGTGTTTATGGAACGGAACTAACATGTGAGATATTTATTGGACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAGGTTCGATCTACTGGCACAATTGACCAGGTCACCCGGCAGCCAATAAAAGGACGAAAGCGTGGTGGGGGAATTCGATTTGGAGAAATGGAACGCGACTCTCTGCTTGCACATGGAGCTGCATATCTTCTGCATGATAGGTTGCACACCTGTTCTGATTATCACATTGCTGATGTTTGTTCACTTTGTGGAAGCATGCTTACAACAACATTCACCCAACCTCAAAAGCGGCCAGTTCGGGAGATTGGTGGTCTACCCCCGGGAAGAGCTCCGAAAAAGGTCACTTGTCATGCTTGCCAAACGAGTAAGGGCATGGAGACAGTTGCCATGCCCTATGTATTTAGATATTTGGCTGCCGAGTTAGCAGCAATGAATATAAAAATGACTCTTAAGCTCAGTGATGGAGCTGGAGCCGGAGCCTGA
Predicted protein sequences of Glyma.17g183400
>Glyma.17g183400.1.p sequence-type=predicted peptide transcript=Glyma.17g183400.1 locus=Glyma.17g183400 id=Glyma.17g183400.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MVVKQGSIPDFEALRELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTSTKLRIWLDNPVLYPPQKERISRTMREALLPFECRQAKISYAGKITIDVCFQYNDGPIIRENINFGQFPIMLQSKLCNLRGADPQKLVSYREEASEMGGYFILNGLERVIRLLILPKRNHPMSMVRNSFSDRREGYTDKAIVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDTTDREIYVNLTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPVITELKNDSYPIVAEAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLLPGHLITLYLKEKLEDWLQKGKRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVENMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNVKDYFKIKMSILNVLLEVGMTPSLPKIFLPGPPEALTVLLDGCVVGCIASSEAEKVVAHIRELKVSSAAVIPDDMEVGYVPLSMGGAYPGLYLCTSPSRFVRPVRNISIPSNGSENIEFIGPFEQVFMEIRCPDGGDGGRKSSFPATHEEIHPTVMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLTEQGGRLDRSSRMFRKSNLEKSACPSIDSDGLPHVGQMIRPDEPYCSIYNEVTSSIHTLKRKGSEAVYVDYVAVDVKNKKHLQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFVDATPFRSSVKKDSGESDSMSGSIVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLTTTFTQPQKRPVREIGGLPPGRAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKMTLKLSDGAGAGA*

>Glyma.17g183400.2.p sequence-type=predicted peptide transcript=Glyma.17g183400.2 locus=Glyma.17g183400 id=Glyma.17g183400.2.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MVVKQGSIPDFEALRELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTSTKLRIWLDNPVLYPPQKERISRTMREALLPFECRQAKISYAGKITIDVCFQYNDGPIIRENINFGQFPIMLQSKLCNLRGADPQKLVSYREEASEMGGYFILNGLERVIRLLILPKRNHPMSMVRNSFSDRREGYTDKAIVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKVAEAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLLPGHLITLYLKEKLEDWLQKGKRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVENMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNVKDYFKIKMSILNVLLEVGMTPSLPKIFLPGPPEALTVLLDGCVVGCIASSEAEKVVAHIRELKVSSAAVIPDDMEVGYVPLSMGGAYPGLYLCTSPSRFVRPVRNISIPSNGSENIEFIGPFEQVFMEIRCPDGGDGGRKSSFPATHEEIHPTVMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLTEQGGRLDRSSRMFRKSNLEKSACPSIDSDGLPHVGQMIRPDEPYCSIYNEVTSSIHTLKRKGSEAVYVDYVAVDVKNKKHLQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFVDATPFRSSVKKDSGESDSMSGSIVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLTTTFTQPQKRPVREIGGLPPGRAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKMTLKLSDGAGAGA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo