SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.17g181800

Feature Type:gene_model
Chromosome:Gm17
Start:21882556
stop:21883574
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g181800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44800.1AT 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein JGI N/AIEA
PTHR10209Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN JGI N/AIEA
PTHR10209:SF55Panther JGI N/AIEA
PWY-5125SoyCyc9 anthocyanin biosynthesis Plant Metabolic Network ISS
PWY-641SoyCyc9 proanthocyanidins biosynthesis from flavanols Plant Metabolic Network ISS
GN7V-66573SoyCyc9-rxn Anthocyanidin synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g181800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g181800 not represented in the dataset
Glyma.17g181800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g181800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g22621 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g181800
>Glyma.17g181800.1 sequence-type=CDS polypeptide=Glyma.17g181800.1.p locus=Glyma.17g181800 ID=Glyma.17g181800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAGTGGTTGAATATGATTTTTTAGGCAAGCCAACCTTTGCAGAATCAAAGGGAGCTTCTCACATCCCTTCAACCAACCACTCTATCACAGACCTCTATGATGATGTAGCTGATGAGCTTGCAGCTTCCATCCCAGTCGATGACTTGTCTCTCCTCACTTCACATGACCCTCAAATTCACACCAAAGCTCTGTACCAACTTGGCAAGGCCTATGCAAAATGGGGTTTCTTCATGCTCACAAATGATGAGACTCTGGAGAAGCTGGTGGAGGATGTGAAGAAAAAGTCTCGTGAGTTTCATGATTTTCCGGTGGAAGAAAAGGAGTTTAGTGACAAATGCCCTTTTACACCCATCAGGTATGGCACCAACTTTTATCCTGAAGCAGAGAATGTTCATTATTGGAGAGATTATCTCAAGGTCATCACATTTCCTGAATTCAACTTCCCCCAAAAACCACCAGGTTACAGGGAGTCTGGCTTGCAGCTTTTGATTGCAAACCTGTACCCACCATGTTTGCAGCCACACCTTGCTCTTGGGATGCTTCCACACTCCTTCCTGACCTCGGTCACACATAATGCAACTTGA
Predicted protein sequences of Glyma.17g181800
>Glyma.17g181800.1.p sequence-type=predicted peptide transcript=Glyma.17g181800.1 locus=Glyma.17g181800 ID=Glyma.17g181800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQVVEYDFLGKPTFAESKGASHIPSTNHSITDLYDDVADELAASIPVDDLSLLTSHDPQIHTKALYQLGKAYAKWGFFMLTNDETLEKLVEDVKKKSREFHDFPVEEKEFSDKCPFTPIRYGTNFYPEAENVHYWRDYLKVITFPEFNFPQKPPGYRESGLQLLIANLYPPCLQPHLALGMLPHSFLTSVTHNAT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo