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Report for Sequence Feature Glyma.17g180700

Feature Type:gene_model
Chromosome:Gm17
Start:20659097
stop:20661784
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g180700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24820.1AT 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain JGI N/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0050790GO-bp regulation of catalytic activity EnsemblGenomesN/AIEA
GO:0030234GO-mf enzyme regulator activity EnsemblGenomesN/AIEA
PTHR14145Panther 26S PROTESOME SUBUNIT 6 JGI N/AIEA
PTHR14145:SF1Panther 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 6 JGI N/AIEA
PF10602PFAM 26S proteasome subunit RPN7 JGI N/AIEA

Expression Patterns of Glyma.17g180700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g180700 not represented in the dataset
Glyma.17g180700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g180700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g21556 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g180700
>Glyma.17g180700.1 sequence-type=CDS polypeptide=Glyma.17g180700.1.p locus=Glyma.17g180700 ID=Glyma.17g180700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATATATGTTGTTAGTCATGAGCATGATTCACAGAATCAGTGAGACTGTTTTAAGTACAGGCATCTACGCCTGGCTCTTTGGAAGCATTACTAAAGTTTTTGGAAACTCCATGGGTGAGTATCCCTGTCAGTGGTACACGCATAGGCCATGTACAGAGGAAAACTTAGGTGAGAGTGAAGTTTGTGAGGCTCACTTGGTAAAATCCTTGTTTTTCATTCGGATTATGGACAAAGAGAAAGCCTTGGAACATCTCAAGGTAACAAAAACCAAGATAGTTGTAGTTGGCCAAAAAATGGACTTGGTGTTTTATACATTGCAACTTGGTTTCTTTGACATGGATTTTGATCTCATTTCCAAAAGCATTGACAAAGCCAAAAAGAAGAATAGGTTGGAAGTGTATGAAGGCTTGTATTTCATGTCCACTCGAAATTTCAAGAAGGCTGCCAAGCTGTTTTTGGGTTCTATTTCAACCTTTACCACCTATGAAGTTTTTCCCTGTGACACCTTTATATTATATACAGTTTTGACCATCATTATATCATTGGATAGAGTTTCCCTAAAGCAAAAGGTAGTAGATTCTCCAAAGATCTTGACAATGATTGGCAAAATCCCATATCTTTCAGAGTTTTTGAACTCCTTATATGATTGTCAATACAAGTCTTTTTTTCTCAGCATT
Predicted protein sequences of Glyma.17g180700
>Glyma.17g180700.1.p sequence-type=predicted peptide transcript=Glyma.17g180700.1 locus=Glyma.17g180700 ID=Glyma.17g180700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEYMLLVMSMIHRISETVLSTGIYAWLFGSITKVFGNSMGEYPCQWYTHRPCTEENLGESEVCEAHLVKSLFFIRIMDKEKALEHLKVTKTKIVVVGQKMDLVFYTLQLGFFDMDFDLISKSIDKAKKKNRLEVYEGLYFMSTRNFKKAAKLFLGSISTFTTYEVFPCDTFILYTVLTIIISLDRVSLKQKVVDSPKILTMIGKIPYLSEFLNSLYDCQYKSFFLSI






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