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Report for Sequence Feature Glyma.17g178900

Feature Type:gene_model
Chromosome:Gm17
Start:19484077
stop:19488744
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g178900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G03780.1AT methionine synthase 2 JGI N/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process JGI N/AIEA
GO:0009086GO-bp methionine biosynthetic process EnsemblGenomesN/AIEA
GO:0009086GO-bp methionine biosynthetic process JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0050667GO-bp homocysteine metabolic process EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0003871GO-mf 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity EnsemblGenomesN/AIEA
GO:0003871GO-mf 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0008705GO-mf methionine synthase activity EnsemblGenomesN/AIEA
PTHR19960Panther TEKTIN JGI N/AIEA
PTHR19960:SF21Panther JGI N/AIEA
PF08267PFAM Cobalamin-independent synthase, N-terminal domain JGI N/AIEA
PWY-5041SoyCyc9 S-adenosyl-L-methionine cycle II Plant Metabolic Network ISS
PWY-702SoyCyc9 L-methionine biosynthesis II Plant Metabolic Network ISS
PWY-724SoyCyc9 superpathway of L-lysine, L-threonine and L-methionine biosynthesis II Plant Metabolic Network ISS
GN7V-53059SoyCyc9-rxn 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g178900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g178900 not represented in the dataset
Glyma.17g178900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g178900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g20690 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g178900
>Glyma.17g178900.1 sequence-type=CDS polypeptide=Glyma.17g178900.1.p locus=Glyma.17g178900 ID=Glyma.17g178900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGTATTCAAATTGTAGATTTTCATTTTGCAATGACAGAGCAATGGCATCTCATATTGTTGGTTATCCACACATAGGACCCAAGAGAGAACTTAAGTCCGCTTTGGAATCTTTTTGGGATGGAAAGAGTAATAAGCAGATGGATGATGCTGGAATAAAGTATATTCCTAGCAATGCTTTCTCATACTACGATCAAGTACTGGACACAACAACCATGCTTGGGGCAGTTCCACCTAGATATAATTGGAATTGTGGGGAGATTGGGTTTGATGTTTACTTCTTGATGGCAAGAAGGAATGCATATGTACCAGCTATGGAAAAGACCAAATGTTTTGACACAAACTATCGTTACATTGTTCCTGAATTAGGTTCAGATGTTAAGTTCTCGTATGCATCACACAAGGTTGTGGATGAATACAAAGAGGCTAAAGTTATCCTTCTTGTCTATAGGGAAGTTATGGCTGAACTAAAGGCAGCTGGTGCTACTTGGATCCAATTTGATGAACCTAACCTTGTGAAGGATCTCAATGCCCACCAGTTACAAGCATTTACTCATGCCTATACAGCGCTAGAGTCAAGTTTATCTGATTTATTTGAAACATGCTACAAGGATGAGGTGGAGGATCTTGAGAAAGCTAGTATTACTGTCATCCAAATTGATAAGGCTACTCTAAGAGAAGGATTTACCAACTATGGTGTGGAGGACACTACTCAGATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACCCAATCATAGACATGGATGTTGATGCTGATGTGATCACCATTCACACTCACATTTCTCTTGACCTCCAGTTAAGATAA
Predicted protein sequences of Glyma.17g178900
>Glyma.17g178900.1.p sequence-type=predicted peptide transcript=Glyma.17g178900.1 locus=Glyma.17g178900 ID=Glyma.17g178900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRYSNCRFSFCNDRAMASHIVGYPHIGPKRELKSALESFWDGKSNKQMDDAGIKYIPSNAFSYYDQVLDTTTMLGAVPPRYNWNCGEIGFDVYFLMARRNAYVPAMEKTKCFDTNYRYIVPELGSDVKFSYASHKVVDEYKEAKVILLVYREVMAELKAAGATWIQFDEPNLVKDLNAHQLQAFTHAYTALESSLSDLFETCYKDEVEDLEKASITVIQIDKATLREGFTNYGVEDTTQIHTHMCYSNFNDIIHPIIDMDVDADVITIHTHISLDLQLR*






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