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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G15790.1 | AT | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase | JGI | N/A | IEA |
| GO:0000413 | GO-bp | protein peptidyl-prolyl isomerization | EnsemblGenomes | N/A | IEA |
| GO:0006457 | GO-bp | protein folding | JGI | N/A | IEA |
| GO:0003755 | GO-mf | peptidyl-prolyl cis-trans isomerase activity | EnsemblGenomes | N/A | IEA |
| GO:0003755 | GO-mf | peptidyl-prolyl cis-trans isomerase activity | JGI | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0016853 | GO-mf | isomerase activity | EnsemblGenomes | N/A | IEA |
| KOG0546 | KOG | HSP90 co-chaperone CPR7/Cyclophilin | JGI | N/A | IEA |
| PTHR11071 | Panther | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | JGI | N/A | IEA |
| PTHR11071:SF98 | Panther | JGI | N/A | IEA | |
| PF00160 | PFAM | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | JGI | N/A | IEA |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| CYP9 | peptidyl-prolyl cis-trans isomerase CYP9 |
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Glyma.17g177600 not represented in the dataset |
Glyma.17g177600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g080800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g20430 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g177600.2 sequence-type=transcript locus=Glyma.17g177600 ID=Glyma.17g177600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AAAGGCGCGACCAGTGACACGTGTATCCGCTAACCGTAGAGGTTTTGTCGCTGGCGGCACGAAAACAAAAGAGTTTGAAATTAGAAAGCGGGATTAGGGTTTTGCACTCCACAGTCCACTCACTCACcttgttctttttcttcttcttcttcttcactgcaatctctctctctctctctctcttcgctttcCAGAAAATGGTGAACCCTAGATGCTTCCTCGACATCACCATCGGCGGCGAGTTAGAAGGCAGGATCGTCGTCGAGCTCTTCCACGACGTTGTTCCCAAAACCGCCGAGAATTTCCGCGCCCTCTGCACCGGCGAAAAGGGCATCGGCCCCAACACCGGCGTCCCCCTCCACTACAAGGGCATGTGTTTCCACCGCGTGATCAAAGGGTTCATGATCCAGGGCGGCGACATCTCCGCTGGGGATGGCACCGGTGGGGAATCAATCTATGGCGCCAAGTTCGAGGACGAGAACTTGGAGATGAAGCACGAGAGGAAGGGGACGCTTTCCATGGCCAATGCGGGACCCAACACCAACGGCTCCCAGTTCTTCATCACCACCACGCGCACTCCTCACTTGGACGGAAAGCACGTCGTGTTTGGGAAAGTTCTGAAAGGAATGGGCATTGTTCGATCTGTGGAACACGTTGTTACTGGGGAGAATGACCGTCCCACTCAGGATGTTGTGGTAGTTGATTGTGGGGAAATTGCTGAAGGGGAAGATGATGGAGTTGTTAACTTCTTTAAGGATGGTGACACCTATCCCGATTGGCCCGCTGATCTCGATGTCAAACCTGATGAACTTTCTTGGTGGATGAGTGCTGTGGACGCTATCAAAACCCTTGGGAATGAGCAGTACAAGAAGCTAGATTATAAGATGGCTCTCAGAAAGTATCGCAAAGCTTTGCGCTATTTGGATGTGTGTTGGGAGAAGGAGGACATTGACCAAGAGAATAGCGCTGCTTTGAGAAAGACAAAATCTCAAATCTTTACAAACAGTTCTGCTTGTAAATTGAAATTAGGTGATCTACAAGGAGCGTTACTGGATTCAGACTTTGCGATGCATGACGGAGATAATGCGAAAGCTCTGTTTCGCAAAGGCCAGGCATATATGTTACTCAACGACCTAGATGCTGCTGTTGAAAGTTTCAAGAAAGCATTAGAGTTGGAGCCGAATGATGGGTTGAAGTTGTCCATGATAATACGATACAATGCTAAAATGAGATCATGGTGTAGTTTTTATTCTGGCTAATAAAGGGCGAGCCCTGGTGCAGCGGTAAagttgtgtcttggtgacttgttggtcatgggttcgaatccggaaacagtctctttgcatatgcaagggtaaggctgcgtacaacatccctcccccataccttcgcatagcgaagagcctctgggcaatggggtacgaagtttttAATAAATTACTCTTTCCATTTCATTATGTCTGTCTTTAGTCCCTTTCAGTTTTCAGTATTATAAAATCATCCTGTTTGGGCAAATGAATCCTCTAAAACACATTTTCCACAATCATTTGAGTCTGAATTCTGAAATCTCTTGAAAGGAAAATATGAAATATCAGTGTGATTGGAATTAATGTTTACTTCAAAAAAATTATGATTTTCGATGCTGTATTACAATGTGAAACAGAAGTATATAGATCCTTTTAATCATTAGACCACGACACTTTGATATTTAAAGTTTACTGGTGTTGCAAAG
>Glyma.17g177600.1 sequence-type=CDS polypeptide=Glyma.17g177600.1.p locus=Glyma.17g177600 ID=Glyma.17g177600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGAACCCTAGATGCTTCCTCGACATCACCATCGGCGGCGAGTTAGAAGGCAGGATCGTCGTCGAGCTCTTCCACGACGTTGTTCCCAAAACCGCCGAGAATTTCCGCGCCCTCTGCACCGGCGAAAAGGGCATCGGCCCCAACACCGGCGTCCCCCTCCACTACAAGGGCATGTGTTTCCACCGCGTGATCAAAGGGTTCATGATCCAGGGCGGCGACATCTCCGCTGGGGATGGCACCGGTGGGGAATCAATCTATGGCGCCAAGTTCGAGGACGAGAACTTGGAGATGAAGCACGAGAGGAAGGGGACGCTTTCCATGGCCAATGCGGGACCCAACACCAACGGCTCCCAGTTCTTCATCACCACCACGCGCACTCCTCACTTGGACGGAAAGCACGTCGTGTTTGGGAAAGTTCTGAAAGGAATGGGCATTGTTCGATCTGTGGAACACGTTGTTACTGGGGAGAATGACCGTCCCACTCAGGATGTTGTGGTAGTTGATTGTGGGGAAATTGCTGAAGGGGAAGATGATGGAGTTGTTAACTTCTTTAAGGATGGTGACACCTATCCCGATTGGCCCGCTGATCTCGATGTCAAACCTGATGAACTTTCTTGGTGGATGAGTGCTGTGGACGCTATCAAAACCCTTGGGAATGAGCAGTACAAGAAGCTAGATTATAAGATGGCTCTCAGAAAGTATCGCAAAGCTTTGCGCTATTTGGATGTGTGTTGGGAGAAGGAGGACATTGACCAAGAGAATAGCGCTGCTTTGAGAAAGACAAAATCTCAAATCTTTACAAACAGTTCTGCTTGTAAATTGAAATTAGGTGATCTACAAGGAGCGTTACTGGATTCAGACTTTGCGATGCATGACGGAGATAATGCGAAAGCTCTGTTTCGCAAAGGCCAGGCATATATGTTACTCAACGACCTAGATGCTGCTGTTGAAAGTTTCAAGAAAGCATTAGAGTTGGAGCCGAATGATGGAGGGATTAAAAAAGAGTATGCCACTGCCAGGAGGAGGGTTGCTGATAGACGTGATCAAGAGAAAAAAGCTTATTCTAGAATGTTCAAATAG >Glyma.17g177600.2 sequence-type=CDS polypeptide=Glyma.17g177600.2.p locus=Glyma.17g177600 ID=Glyma.17g177600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGAACCCTAGATGCTTCCTCGACATCACCATCGGCGGCGAGTTAGAAGGCAGGATCGTCGTCGAGCTCTTCCACGACGTTGTTCCCAAAACCGCCGAGAATTTCCGCGCCCTCTGCACCGGCGAAAAGGGCATCGGCCCCAACACCGGCGTCCCCCTCCACTACAAGGGCATGTGTTTCCACCGCGTGATCAAAGGGTTCATGATCCAGGGCGGCGACATCTCCGCTGGGGATGGCACCGGTGGGGAATCAATCTATGGCGCCAAGTTCGAGGACGAGAACTTGGAGATGAAGCACGAGAGGAAGGGGACGCTTTCCATGGCCAATGCGGGACCCAACACCAACGGCTCCCAGTTCTTCATCACCACCACGCGCACTCCTCACTTGGACGGAAAGCACGTCGTGTTTGGGAAAGTTCTGAAAGGAATGGGCATTGTTCGATCTGTGGAACACGTTGTTACTGGGGAGAATGACCGTCCCACTCAGGATGTTGTGGTAGTTGATTGTGGGGAAATTGCTGAAGGGGAAGATGATGGAGTTGTTAACTTCTTTAAGGATGGTGACACCTATCCCGATTGGCCCGCTGATCTCGATGTCAAACCTGATGAACTTTCTTGGTGGATGAGTGCTGTGGACGCTATCAAAACCCTTGGGAATGAGCAGTACAAGAAGCTAGATTATAAGATGGCTCTCAGAAAGTATCGCAAAGCTTTGCGCTATTTGGATGTGTGTTGGGAGAAGGAGGACATTGACCAAGAGAATAGCGCTGCTTTGAGAAAGACAAAATCTCAAATCTTTACAAACAGTTCTGCTTGTAAATTGAAATTAGGTGATCTACAAGGAGCGTTACTGGATTCAGACTTTGCGATGCATGACGGAGATAATGCGAAAGCTCTGTTTCGCAAAGGCCAGGCATATATGTTACTCAACGACCTAGATGCTGCTGTTGAAAGTTTCAAGAAAGCATTAGAGTTGGAGCCGAATGATGGGTTGAAGTTGTCCATGATAATACGATACAATGCTAAAATGAGATCATGGTGTAGTTTTTATTCTGGCTAA
>Glyma.17g177600.1.p sequence-type=predicted peptide transcript=Glyma.17g177600.1 locus=Glyma.17g177600 ID=Glyma.17g177600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVNPRCFLDITIGGELEGRIVVELFHDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGMCFHRVIKGFMIQGGDISAGDGTGGESIYGAKFEDENLEMKHERKGTLSMANAGPNTNGSQFFITTTRTPHLDGKHVVFGKVLKGMGIVRSVEHVVTGENDRPTQDVVVVDCGEIAEGEDDGVVNFFKDGDTYPDWPADLDVKPDELSWWMSAVDAIKTLGNEQYKKLDYKMALRKYRKALRYLDVCWEKEDIDQENSAALRKTKSQIFTNSSACKLKLGDLQGALLDSDFAMHDGDNAKALFRKGQAYMLLNDLDAAVESFKKALELEPNDGGIKKEYATARRRVADRRDQEKKAYSRMFK* >Glyma.17g177600.2.p sequence-type=predicted peptide transcript=Glyma.17g177600.2 locus=Glyma.17g177600 ID=Glyma.17g177600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVNPRCFLDITIGGELEGRIVVELFHDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGMCFHRVIKGFMIQGGDISAGDGTGGESIYGAKFEDENLEMKHERKGTLSMANAGPNTNGSQFFITTTRTPHLDGKHVVFGKVLKGMGIVRSVEHVVTGENDRPTQDVVVVDCGEIAEGEDDGVVNFFKDGDTYPDWPADLDVKPDELSWWMSAVDAIKTLGNEQYKKLDYKMALRKYRKALRYLDVCWEKEDIDQENSAALRKTKSQIFTNSSACKLKLGDLQGALLDSDFAMHDGDNAKALFRKGQAYMLLNDLDAAVESFKKALELEPNDGLKLSMIIRYNAKMRSWCSFYSG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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