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Report for Sequence Feature Glyma.17g172500

Feature Type:gene_model
Chromosome:Gm17
Start:17619827
stop:17628579
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g172500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G23420.1AT nicotinate phosphoribosyltransferase 2 JGI N/AIEA
GO:0009435GO-bp NAD biosynthetic process EnsemblGenomesN/AIEA
GO:0019358GO-bp nicotinate nucleotide salvage EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004514GO-mf nicotinate-nucleotide diphosphorylase (carboxylating) activity EnsemblGenomesN/AIEA
GO:0004516GO-mf nicotinate phosphoribosyltransferase activity EnsemblGenomesN/AIEA
KOG2511 KOG Nicotinic acid phosphoribosyltransferase JGI N/AIEA
PTHR11098Panther NICOTINATE PHOSPHORIBOSYLTRANSFERASE JGI N/AIEA
PTHR11098:SF1Panther NICOTINATE PHOSPHORIBOSYLTRANSFERASE JGI N/AIEA
PF04095PFAM Nicotinate phosphoribosyltransferase (NAPRTase) family JGI N/AIEA
PWY-5381SoyCyc9 pyridine nucleotide cycling (plants) Plant Metabolic Network ISS
GN7V-57159SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.17g172500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g172500 not represented in the dataset
Glyma.17g172500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g172500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g19660 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g172500
>Glyma.17g172500.1 sequence-type=CDS polypeptide=Glyma.17g172500.1.p locus=Glyma.17g172500 ID=Glyma.17g172500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGTTGAAGGCCCAGTTGCTGTTGTTCAATTGCTGGAAACACCTTTTGTGAATCTAATTAATTATGCATCTTTAGTTTCTACTAATGCTGCAAGGCATCGTAATGTTGCTGGAAAATCCAAAACTCTACTTGAGTTTGGATTACGAAGGGCTCAGGGGCCTGATGGTGGAGTAGGAGCATCCAAGTACTGCTATATTGGTGGATTTGATGCAACAAGCAATGTTGCAGCAGGAAAGTTATTCGGGATACCCCTTCGTGGTACTCATTCCCATGCCTTTGTTAGTTCATACATGAGCCTTGATGAGATTACAGACAGGTCACTTAACAGAAAAGATGGTTCAAGTACGTGTGATGATTTTGTCAGTCTCGTTCAAACATGGTTGAACAAAATTCAGTTATCAAATGGTGTTTTTGGTGAGACCAATCAAAGTGAGTTGGCTGCATTCACATCATATGCTTTGGCATTTCCTGATGGTTTTCTTGCCCTCGTAGATACATATGATGTTATGAGAAGTGGAATCCCTAATTTCTGTGCAGTTGCATTAGCTCTCAGTGATTTAGGATACAAAGCAGTTGGCATTAGATTGGACTCTGGTGACCTTGCATACTTGTCTTGTGAGGTCAGGAAGTTCTTTTACTCTATTGAGAATGAATTTGGAGTGCCTGGATTTGGGAAGTTGCAAATCACTGCTAGTAATGATCTTAATGAGGAAACATTAGATGCTTTAAACAAACAGGGACATGAGGTTGATGCCTTTGGAATTGGTACATATCTAGTTACATGTTATGCTCAAGCTGCTTTAGGTGTTGTCTTCAAGCTGGTTGAAATAAATAATCAGCCTCGTATCAAACTTTCTGAAGATGTATCAAAGGTCTCTATTCCATGTAAAAAGTGCTGCTATAGATTGTATGGGAAAGAAGGTTATCCCCTGGTGGACATAATGACTGGAGAAAATGAGCCCTCTCCAAAGGTGGGAGAAAGAATCCTGTGCCGTCATCCCTTCCAAGAATCCAAGAGAGCATATGTGGTGCCACAGCGTGTTGAGGAGCTTCTGAGGTGTTACTGGTCTGGGAGTACAGATATTAAGAAAGATACTTTACCAGCTCTAAGAGATATTAGAGAGCGATGCATCAATCAACTTGAGCAAATGCGACCTGACCACATGAGGAGACTTAACCCAACTCCATATAAGGTTAGTGTTAGTGCAAAATTATACGACTTCATTCATTTCCTGTGGCTCAATGAGGCACCAGTTGGGGAGCTACAGTAA
Predicted protein sequences of Glyma.17g172500
>Glyma.17g172500.1.p sequence-type=predicted peptide transcript=Glyma.17g172500.1 locus=Glyma.17g172500 ID=Glyma.17g172500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRVEGPVAVVQLLETPFVNLINYASLVSTNAARHRNVAGKSKTLLEFGLRRAQGPDGGVGASKYCYIGGFDATSNVAAGKLFGIPLRGTHSHAFVSSYMSLDEITDRSLNRKDGSSTCDDFVSLVQTWLNKIQLSNGVFGETNQSELAAFTSYALAFPDGFLALVDTYDVMRSGIPNFCAVALALSDLGYKAVGIRLDSGDLAYLSCEVRKFFYSIENEFGVPGFGKLQITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGVVFKLVEINNQPRIKLSEDVSKVSIPCKKCCYRLYGKEGYPLVDIMTGENEPSPKVGERILCRHPFQESKRAYVVPQRVEELLRCYWSGSTDIKKDTLPALRDIRERCINQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ*






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