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Report for Sequence Feature Glyma.17g166800

Feature Type:gene_model
Chromosome:Gm17
Start:15237321
stop:15251730
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g166800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37270.1AT heavy metal atpase 1 JGI N/AIEA
GO:0006812GO-bp cation transport EnsemblGenomesN/AIEA
GO:0099132GO-bp ATP hydrolysis coupled cation transmembrane transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0019829GO-mf cation-transporting ATPase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
KOG0207 KOG Cation transport ATPase JGI N/AIEA
PTHR24093Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24093:SF175Panther JGI N/AIEA
PF00122PFAM E1-E2 ATPase JGI N/AIEA
PF00702PFAM haloacid dehalogenase-like hydrolase JGI N/AIEA
PWY-6135SoyCyc9 copper transport I Plant Metabolic Network ISS

Expression Patterns of Glyma.17g166800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g166800
ParalogEvidenceComments
Glyma.05g098800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g166800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g18250 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g166800
>Glyma.17g166800.1 sequence-type=CDS polypeptide=Glyma.17g166800.1.p locus=Glyma.17g166800 ID=Glyma.17g166800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCAATTCCTTATTCAATCCCCTCCACCAAATTGCACTCATCTCTTCATATTTACACCGGCGTTACACGAATTCGATCCCTCCCTCTTCGCCCTCCCCCAATCTCAATCAAACCTCTATATTCCCCCAATTTCCTCATTCTCCATCGCCACAGACTTCGCTGCGTCGCTGAATCCTCCAATAATCATCATCATCATGACCACGACCATCACCACGGCCACCACCACCACCATCATCATCATCACCACTCCCACGGTGCTAATCTCACCGGGCCTCAAAAAGCTGTCATCGCTTTCGCCAAAGCCACCAGATGGATGGACCTGGCAGACATCCTGAGGGAGCACCTGCATCTTTGCTGCTTCTCCACCGCTCTCTTCGTCGCCGCCGCAATTTGCCCTCACACCTTGCCCAAGCCACTCGTCAAGCCTCTTCAAAACTCCCTCATCTTCGTCGCCTTCCCTCTGGTTGGGGTTTCTGCATCACTTGACGCTCTCATAGAAATCAGCAGCGGAAAGGTGAACATCCATGTTCTGATGGCTATGGCAGCCTTTGCATCGATATTCATGGGAAACTCTTTGGAAGGAGGCCTGCTTCTTGCCATGTTTAACCTCGCGCATATCGCCGAAGAGTATTTCACCAGCCGGTCGATGGTTGATGTTAGGGAGTTGAAAGAAAATAATCCAGATTTCGCCCTTGTTCTGGATACCAATGATGATGATAAACTCCCCAATACGTTTGACTTGGCATACAAGAGGGTTCCCGTGCATGATGTGACTGTAGGATCATTTATTCTGGTTGGCACCGGCGAGTCTGTGCCAGTAGATTGTGAAGTATTCCAAGGCAGTGCCACAATTACCATCGAGCACTTGACAGGGGAAGTCAAACCTTTGGAAGCCAAAGTTGGAGATAGAATTCCTGGTGGTTCAAGGAACTTAGATGGGAGGATAATTGTGGAGGTAATGAAAACTTGGAAGGAATCAACTCTCAGCAGAATTGTTCAGTTAACTGAAGAAGCACAGTCAAATAAACCTAAACTTGAAAGGTGGCTGGATGAATTTGGTGAACGTTATAGCCAAGTTGTTGTGGTGTTATCAATTGCTATTGCTGTTATTGGGCCATTTTTATTTAAGTGGCCATTCGTTAGTACATCCGCTTGCAGAGGTTCAATTTACAGAGCCTTAGGGCTTATGGTGGCAGCATCCCCTTGTGCCTTGGCTGTGGCCCCATTGGCATATGCTATAGCAATCAGTTCCTGTGCCAGAAAGGGGATATTACTCAAAGGTGGGCATGTTCTGGATGCTCTTGCTTCTTGTCATACTATTGCATTTGACAAAACAGGGACATTGACCACTGGTGGACTCGTATTCAAGGCAATTGAGCCCATTTATGGTCATCATGTTAGAAACAACGAATCAAATGTTCCTTCGTGTTGCATTCCCACCTGTGAAAAAGAAGCTCTTGCTGTTGCTTCAGCAATGGAAAAGGGTACCACTCACCCTATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTGTTTCTGTTGAAAGTTTCGAATACTTTCCTGGTAGAGGCCTTACTGCTACTGTTAACAGCATTGAGTCAGGAACTGGAGGTGCTAAACTATTGAAAGCATCACTTGGGTCAATAGATTTCATCACCTCTTTATGTCAATCTGAAGATGAGTCAGAAAAGATCAAGGAAGCTGTTAATACATCTTCTTATGGAAGTGAATATGTTCATGCTGCCCTTTCAGTTAATCAGAAGGTAACATTGATTCATCTAGAGGATAGGCCACGTCCTGGGGTTGTTAATGTTATTCAAGAATTGCAAGATGAAGCAAAGTTACGTGTGATGATGTTAACTGGTGATCATGAGTCTAGTGCAAGGCGAGTTGCAAGTGGTGTGGGCATCAATGAGTTTCATTGCAACCTGAAGCCTGAAGATAAGCTGAGTCATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTCGGTGAAGGCATCAATGATGCCCCAGCACTAGCTGCTGCAACTGTTGGGATAGTTCTTGCTCACCGAGCTAGTGCAACTGCCATCGCTGTTGCCGATGTATTGTTGCTTAGAGAAAGCATTTCTGCAGTGCCATTTTGTATTGCCAAGTCTCGCCAAACAACTTCACTGATTAAACAAAATGTAGCTTTAGCATTGACGTCCATTCTCATGGCTTCCCTTCCATCAGTTTTGGGATTTCTGCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCCTGCTTGTCTGTCTCAATTCCGTACGTGCTCTGAATGAACCATCTTGGTCCTGGAAGCATGATATATTCCATTTGATTAGCGAGATTAAATCTAGACTCCTGTCTCTCAAGACAAATATCACGGGCTCAAACAGTATCATAACGACGAATTTGTAA
Predicted protein sequences of Glyma.17g166800
>Glyma.17g166800.1.p sequence-type=predicted peptide transcript=Glyma.17g166800.1 locus=Glyma.17g166800 ID=Glyma.17g166800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEAIPYSIPSTKLHSSLHIYTGVTRIRSLPLRPPPISIKPLYSPNFLILHRHRLRCVAESSNNHHHHDHDHHHGHHHHHHHHHHSHGANLTGPQKAVIAFAKATRWMDLADILREHLHLCCFSTALFVAAAICPHTLPKPLVKPLQNSLIFVAFPLVGVSASLDALIEISSGKVNIHVLMAMAAFASIFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVRELKENNPDFALVLDTNDDDKLPNTFDLAYKRVPVHDVTVGSFILVGTGESVPVDCEVFQGSATITIEHLTGEVKPLEAKVGDRIPGGSRNLDGRIIVEVMKTWKESTLSRIVQLTEEAQSNKPKLERWLDEFGERYSQVVVVLSIAIAVIGPFLFKWPFVSTSACRGSIYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLVFKAIEPIYGHHVRNNESNVPSCCIPTCEKEALAVASAMEKGTTHPIGRAVVDHSEGKDLPSVSVESFEYFPGRGLTATVNSIESGTGGAKLLKASLGSIDFITSLCQSEDESEKIKEAVNTSSYGSEYVHAALSVNQKVTLIHLEDRPRPGVVNVIQELQDEAKLRVMMLTGDHESSARRVASGVGINEFHCNLKPEDKLSHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRESISAVPFCIAKSRQTTSLIKQNVALALTSILMASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEPSWSWKHDIFHLISEIKSRLLSLKTNITGSNSIITTNL*






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