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Report for Sequence Feature Glyma.17g160500

Feature Type:gene_model
Chromosome:Gm17
Start:13938649
stop:13948269
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g160500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67580.1AT Homeodomain-like/winged-helix DNA-binding family protein JGI N/AIEA
GO:0006334GO-bp nucleosome assembly EnsemblGenomesN/AIEA
GO:0006334GO-bp nucleosome assembly JGI N/AIEA
GO:0031627GO-bp telomeric loop formation EnsemblGenomesN/AIEA
GO:0000784GO-cc nuclear chromosome, telomeric region EnsemblGenomesN/AIEA
GO:0000786GO-cc nucleosome EnsemblGenomesN/AIEA
GO:0000786GO-cc nucleosome JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005694GO-cc chromosome EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003682GO-mf chromatin binding JGI N/AIEA
GO:0003691GO-mf double-stranded telomeric DNA binding EnsemblGenomesN/AIEA
PTHR21717Panther TELOMERIC REPEAT BINDING PROTEIN JGI N/AIEA
PTHR21717:SF9Panther HOMEODOMAIN-LIKE PROTEIN WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-RELATED JGI N/AIEA
PF00249PFAM Myb-like DNA-binding domain JGI N/AIEA
PF00538PFAM linker histone H1 and H5 family JGI N/AIEA

Proteins Associated with Glyma.17g160500
LocusGene SymbolProtein Name
MYB85 MYB transcription factor MYB85

Expression Patterns of Glyma.17g160500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g160500
ParalogEvidenceComments
Glyma.05g106000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g160500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g17370 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g160500
>Glyma.17g160500.2 sequence-type=transcript locus=Glyma.17g160500 ID=Glyma.17g160500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTATTCTATTTTATATTTTGCCTCGATTGAATAGAACTCGTTTCATATGTCTCATTCTTCTCTGGTTTTGTTTTTTGGCAAAATCATTCGGATTAATTCAATTTCTCTGTGTAAATACTTTAACGTTTCCAATTCTCACCTTCGCCCAGTGATTTGTAGTCAGCTTTTTTCTTGTTCAAAGATGCACTAGTAGAAGAGGGAATTACCAAGTTTCCAAGCTTTCCTTTAGAGTAGAAGCAAAGAGGTAAAGTGTCATAAAAAGCTGTAGGCTTCCTTCAATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCACTGAAAGCTGGTGTACTCAAGCATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATTTTGCATATGCGTTCGAATGTAGATCTTAAGGATAAATGGAGGAATATAAACGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTGCCAGCCCCCAAAATTGACAATAACCATATGGCCTTGAGTACCGTAGTTCGACATGATGAAGTTCTTGATACTAAACCCTTGGCAGTTTCTGGTGGACCATTGCAATCTACCAATTTGAAAGAACAAATATCTAGGTTGGTGGATAATCATATATTAGAGGCAATTGTCTACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTTTCCACCAAATCTCAGTAAACTACTGCCAGCCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGATTGCGCCAAGTTCAACAGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGACAGGCCCAAAGATCCTTCAGAAGCACATAAGAATGATGATGTCAACATCCTTTTAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCGGCTGCAAAAGCAGTTGCGGAGGCAGAGACTGCAATTGCACaggctgaggcagcagctagggaggcagaggctgcagaagctgaggctgaggctgCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGATAGTGTGGACTTACTCATGTTCATCATCAGCAGACTTAGCTTTGAGATGATAGTTCTGCTGCTGGCTATGCTTCCGGCCAGTTTTTTCGTAACTGTACATAATTTTCGGCTTGTAAATCTGGAATATGCAGGATGATTCATGAAACATTTTGTCAGGAATCAATAACAGCCttttttattttttatttttattttacctttttcttatAAAGACAATGAGGGGAAAGCTACAAAGCAGTAACGGAAGAGTGGAAATAGCCATGTTTTGCTGTAATGGAATGATTGACATCCGCGTAGAGTAAATGAAGGAAAACAATTTTTAGTGGTGTTCAAATAGCAATATGGATTGTCATTGACATGCAGATCATATATTCAATGCTTGTTCTAAGACATCGCCATATTACTCTTATATTACGGTAATATATTGACTTCCTTTTGAAGTTTGTCAAAATTATATTTGTGAACATCCTTGATCTATTGG

>Glyma.17g160500.3 sequence-type=transcript locus=Glyma.17g160500 ID=Glyma.17g160500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCGTTTCATATGTCTCATTCTTCTCTGGTTTTGTTTTTTGGCAAAATCATTCGGATTAATTCAATTTCTCTGTGTAAATACTTTAACGTTTCCAATTCTCACCTTCGCCCAGTGATTTGTCAGCTTTTTTCTTGTTCAAAGATGCACTAGTAGAAGAGGGAATTACCAAGTTTCCAAGCTTTCCTTTAGAGTAGAAGCAAAGAGGTAAAGTGTCATAAAAAGCTGTAGGCTTCCTTCAATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCACTGAAAGCTGGTGTACTCAAGCATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATTTTGCATATGCGTTCGAATGTAGATCTTAAGGATAAATGGAGGAATATAAACGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTGCCAGCCCCCAAAATTGACAATAACCATATGGCCTTGAGTACCGTAGTTCGACATGATGAAGTTCTTGATACTAAACCCTTGGCAGTTTCTGGTGGACCATTGCAATCTACCAATTTGAAAGAACAAATATCTAGGTTGGTGGATAATCATATATTAGAGGCAATTGTCTACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTTTCCACCAAATCTCAGTAAACTACTGCCAGCCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGATTGCGCCAAGTTCAACAGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGACAGGCCCAAAGATCCTTCAGAAGCACATAAGAATGATGATGTCAACATCCTTTTAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCGGCTGCAAAAGCAGTTGCGGAGGCAGAGACTGCAATTGCACaggctgaggcagcagctagggaggcagaggctgcagaagctgaggctgaggctgCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGATAGTGTGGACTTACTCATGTTCATCATCAGCAGACTTAGCTTTGAGATGATAGTTCTGCTGCTGGCTATGCTTCCGGCCAGTTTTTTCGTAACTGTACATAATTTTCGGCTTGTAAATCTGGAATATGCAGGATGATTCATGAAACATTTTGTCAGGAATCAATAACAGCCttttttattttttatttttattttacctttttcttatAAAGACAATGAGGGGAAAGCTACAAAGCAGTAACGGAAGAGTGGAAATAGCCATGTTTTGCTGTAATGGAATGATTGACATCCGCGTAGAGTAAATGAAGGAAAACAATTTTTAGTGGTGTTCAAATAGCAATATGGATTGTCATTGACATGCAGATCATATATTCAATGCTTGTTCTAAGACATCGCCATATTACTCTTATATTACGGTAATATATTGACTTCCTTTTGAAGTTTGTC
Coding sequences of Glyma.17g160500
>Glyma.17g160500.1 sequence-type=CDS polypeptide=Glyma.17g160500.1.p locus=Glyma.17g160500 ID=Glyma.17g160500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCACTGAAAGCTGGTGTACTCAAGCATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATTTTGCATATGCGTTCGAATGTAGATCTTAAGGATAAATGGAGGAATATAAACGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTGCCAGCCCCCAAAATTGACAATAACCATATGGCCTTGAGTACCGTAGTTCGACATGATGAAGTTCTTGATACTAAACCCTTGGCAGTTTCTGGTGGACCATTGCAATCTACCAATTTGAAAGAACAAATATCTAGGTTGGTGGATAATCATATATTAGAGGCAATTGTCTACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTTTCCACCAAATCTCAGTAAACTACTGCCAGCCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGATTGCGCCAAGTTCAACAGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGACAGGCCCAAAGATCCTTCAGAAGCACATAAGAATGATGATGTCAACATCCTTTTAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCGGCTGCAAAAGCAGTTGCGGAGGCAGAGACTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAGGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGA

>Glyma.17g160500.2 sequence-type=CDS polypeptide=Glyma.17g160500.2.p locus=Glyma.17g160500 ID=Glyma.17g160500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCACTGAAAGCTGGTGTACTCAAGCATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATTTTGCATATGCGTTCGAATGTAGATCTTAAGGATAAATGGAGGAATATAAACGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTGCCAGCCCCCAAAATTGACAATAACCATATGGCCTTGAGTACCGTAGTTCGACATGATGAAGTTCTTGATACTAAACCCTTGGCAGTTTCTGGTGGACCATTGCAATCTACCAATTTGAAAGAACAAATATCTAGGTTGGTGGATAATCATATATTAGAGGCAATTGTCTACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTTTCCACCAAATCTCAGTAAACTACTGCCAGCCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGATTGCGCCAAGTTCAACAGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGACAGGCCCAAAGATCCTTCAGAAGCACATAAGAATGATGATGTCAACATCCTTTTAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCGGCTGCAAAAGCAGTTGCGGAGGCAGAGACTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAGGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGA

>Glyma.17g160500.3 sequence-type=CDS polypeptide=Glyma.17g160500.3.p locus=Glyma.17g160500 ID=Glyma.17g160500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCACTGAAAGCTGGTGTACTCAAGCATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATTTTGCATATGCGTTCGAATGTAGATCTTAAGGATAAATGGAGGAATATAAACGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTGCCAGCCCCCAAAATTGACAATAACCATATGGCCTTGAGTACCGTAGTTCGACATGATGAAGTTCTTGATACTAAACCCTTGGCAGTTTCTGGTGGACCATTGCAATCTACCAATTTGAAAGAACAAATATCTAGGTTGGTGGATAATCATATATTAGAGGCAATTGTCTACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTTTCCACCAAATCTCAGTAAACTACTGCCAGCCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGATTGCGCCAAGTTCAACAGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGACAGGCCCAAAGATCCTTCAGAAGCACATAAGAATGATGATGTCAACATCCTTTTAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCGGCTGCAAAAGCAGTTGCGGAGGCAGAGACTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAGGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGA
Predicted protein sequences of Glyma.17g160500
>Glyma.17g160500.1.p sequence-type=predicted peptide transcript=Glyma.17g160500.1 locus=Glyma.17g160500 ID=Glyma.17g160500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILHMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTVVRHDEVLDTKPLAVSGGPLQSTNLKEQISRLVDNHILEAIVYMKEQKGSDKAAIASFIEEKYRFPPNLSKLLPAKLKHMVASGKIIKEKHKYRIAPSSTVSEKRRCSSLVLLEDRPKDPSEAHKNDDVNILLKSQIDAEISKVKGLTAQEAAAAAAKAVAEAETAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHI*

>Glyma.17g160500.2.p sequence-type=predicted peptide transcript=Glyma.17g160500.2 locus=Glyma.17g160500 ID=Glyma.17g160500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILHMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTVVRHDEVLDTKPLAVSGGPLQSTNLKEQISRLVDNHILEAIVYMKEQKGSDKAAIASFIEEKYRFPPNLSKLLPAKLKHMVASGKIIKEKHKYRIAPSSTVSEKRRCSSLVLLEDRPKDPSEAHKNDDVNILLKSQIDAEISKVKGLTAQEAAAAAAKAVAEAETAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHI*

>Glyma.17g160500.3.p sequence-type=predicted peptide transcript=Glyma.17g160500.3 locus=Glyma.17g160500 ID=Glyma.17g160500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILHMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTVVRHDEVLDTKPLAVSGGPLQSTNLKEQISRLVDNHILEAIVYMKEQKGSDKAAIASFIEEKYRFPPNLSKLLPAKLKHMVASGKIIKEKHKYRIAPSSTVSEKRRCSSLVLLEDRPKDPSEAHKNDDVNILLKSQIDAEISKVKGLTAQEAAAAAAKAVAEAETAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHI*






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