Glyma.17g160500

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Report for Sequence Feature Glyma.17g160500

Feature Type:	gene_model
Chromosome:	Gm17
Start:	13938649
stop:	13948269
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g160500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67580.1	AT	Homeodomain-like/winged-helix DNA-binding family protein	JGI	N/A	IEA
GO:0006334	GO-bp	nucleosome assembly	EnsemblGenomes	N/A	IEA
GO:0006334	GO-bp	nucleosome assembly	JGI	N/A	IEA
GO:0031627	GO-bp	telomeric loop formation	EnsemblGenomes	N/A	IEA
GO:0000784	GO-cc	nuclear chromosome, telomeric region	EnsemblGenomes	N/A	IEA
GO:0000786	GO-cc	nucleosome	EnsemblGenomes	N/A	IEA
GO:0000786	GO-cc	nucleosome	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
GO:0005694	GO-cc	chromosome	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	JGI	N/A	IEA
GO:0003682	GO-mf	chromatin binding	JGI	N/A	IEA
GO:0003691	GO-mf	double-stranded telomeric DNA binding	EnsemblGenomes	N/A	IEA
PTHR21717	Panther	TELOMERIC REPEAT BINDING PROTEIN	JGI	N/A	IEA
PTHR21717:SF9	Panther	HOMEODOMAIN-LIKE PROTEIN WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-RELATED	JGI	N/A	IEA
PF00249	PFAM	Myb-like DNA-binding domain	JGI	N/A	IEA
PF00538	PFAM	linker histone H1 and H5 family	JGI	N/A	IEA

Proteins Associated with Glyma.17g160500

Locus	Gene Symbol	Protein Name
	MYB85	MYB transcription factor MYB85

Expression Patterns of Glyma.17g160500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g160500 not represented in the dataset	Glyma.17g160500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g160500

Paralog	Evidence	Comments
Glyma.05g106000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g160500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g17370	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g160500

Limit To All Plant Sequences

>Glyma.17g160500.2 sequence-type=transcript locus=Glyma.17g160500 ID=Glyma.17g160500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTATTCTATTTTATATTTTGCCTCGATTGAATAGAACTCGTTTCATATGTCTCATTCTTCTCTGGTTTTGTTTTTTGGCAAAATCATTCGGATTAATTCAATTTCTCTGTGTAAATACTTTAACGTTTCCAATTCTCACCTTCGCCCAGTGATTTGTAGTCAGCTTTTTTCTTGTTCAAAGATGCACTAGTAGAAGAGGGAATTACCAAGTTTCCAAGCTTTCCTTTAGAGTAGAAGCAAAGAGGTAAAGTGTCATAAAAAGCTGTAGGCTTCCTTCAATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCACTGAAAGCTGGTGTACTCAAGCATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATTTTGCATATGCGTTCGAATGTAGATCTTAAGGATAAATGGAGGAATATAAACGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTGCCAGCCCCCAAAATTGACAATAACCATATGGCCTTGAGTACCGTAGTTCGACATGATGAAGTTCTTGATACTAAACCCTTGGCAGTTTCTGGTGGACCATTGCAATCTACCAATTTGAAAGAACAAATATCTAGGTTGGTGGATAATCATATATTAGAGGCAATTGTCTACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTTTCCACCAAATCTCAGTAAACTACTGCCAGCCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGATTGCGCCAAGTTCAACAGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGACAGGCCCAAAGATCCTTCAGAAGCACATAAGAATGATGATGTCAACATCCTTTTAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCGGCTGCAAAAGCAGTTGCGGAGGCAGAGACTGCAATTGCACaggctgaggcagcagctagggaggcagaggctgcagaagctgaggctgaggctgCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGATAGTGTGGACTTACTCATGTTCATCATCAGCAGACTTAGCTTTGAGATGATAGTTCTGCTGCTGGCTATGCTTCCGGCCAGTTTTTTCGTAACTGTACATAATTTTCGGCTTGTAAATCTGGAATATGCAGGATGATTCATGAAACATTTTGTCAGGAATCAATAACAGCCttttttattttttatttttattttacctttttcttatAAAGACAATGAGGGGAAAGCTACAAAGCAGTAACGGAAGAGTGGAAATAGCCATGTTTTGCTGTAATGGAATGATTGACATCCGCGTAGAGTAAATGAAGGAAAACAATTTTTAGTGGTGTTCAAATAGCAATATGGATTGTCATTGACATGCAGATCATATATTCAATGCTTGTTCTAAGACATCGCCATATTACTCTTATATTACGGTAATATATTGACTTCCTTTTGAAGTTTGTCAAAATTATATTTGTGAACATCCTTGATCTATTGG

>Glyma.17g160500.3 sequence-type=transcript locus=Glyma.17g160500 ID=Glyma.17g160500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCGTTTCATATGTCTCATTCTTCTCTGGTTTTGTTTTTTGGCAAAATCATTCGGATTAATTCAATTTCTCTGTGTAAATACTTTAACGTTTCCAATTCTCACCTTCGCCCAGTGATTTGTCAGCTTTTTTCTTGTTCAAAGATGCACTAGTAGAAGAGGGAATTACCAAGTTTCCAAGCTTTCCTTTAGAGTAGAAGCAAAGAGGTAAAGTGTCATAAAAAGCTGTAGGCTTCCTTCAATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCACTGAAAGCTGGTGTACTCAAGCATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATTTTGCATATGCGTTCGAATGTAGATCTTAAGGATAAATGGAGGAATATAAACGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTGCCAGCCCCCAAAATTGACAATAACCATATGGCCTTGAGTACCGTAGTTCGACATGATGAAGTTCTTGATACTAAACCCTTGGCAGTTTCTGGTGGACCATTGCAATCTACCAATTTGAAAGAACAAATATCTAGGTTGGTGGATAATCATATATTAGAGGCAATTGTCTACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTTTCCACCAAATCTCAGTAAACTACTGCCAGCCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGATTGCGCCAAGTTCAACAGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGACAGGCCCAAAGATCCTTCAGAAGCACATAAGAATGATGATGTCAACATCCTTTTAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCGGCTGCAAAAGCAGTTGCGGAGGCAGAGACTGCAATTGCACaggctgaggcagcagctagggaggcagaggctgcagaagctgaggctgaggctgCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGATAGTGTGGACTTACTCATGTTCATCATCAGCAGACTTAGCTTTGAGATGATAGTTCTGCTGCTGGCTATGCTTCCGGCCAGTTTTTTCGTAACTGTACATAATTTTCGGCTTGTAAATCTGGAATATGCAGGATGATTCATGAAACATTTTGTCAGGAATCAATAACAGCCttttttattttttatttttattttacctttttcttatAAAGACAATGAGGGGAAAGCTACAAAGCAGTAACGGAAGAGTGGAAATAGCCATGTTTTGCTGTAATGGAATGATTGACATCCGCGTAGAGTAAATGAAGGAAAACAATTTTTAGTGGTGTTCAAATAGCAATATGGATTGTCATTGACATGCAGATCATATATTCAATGCTTGTTCTAAGACATCGCCATATTACTCTTATATTACGGTAATATATTGACTTCCTTTTGAAGTTTGTC

Coding sequences of Glyma.17g160500

Limit To All Plant Sequences

>Glyma.17g160500.1 sequence-type=CDS polypeptide=Glyma.17g160500.1.p locus=Glyma.17g160500 ID=Glyma.17g160500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCACTGAAAGCTGGTGTACTCAAGCATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATTTTGCATATGCGTTCGAATGTAGATCTTAAGGATAAATGGAGGAATATAAACGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTGCCAGCCCCCAAAATTGACAATAACCATATGGCCTTGAGTACCGTAGTTCGACATGATGAAGTTCTTGATACTAAACCCTTGGCAGTTTCTGGTGGACCATTGCAATCTACCAATTTGAAAGAACAAATATCTAGGTTGGTGGATAATCATATATTAGAGGCAATTGTCTACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTTTCCACCAAATCTCAGTAAACTACTGCCAGCCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGATTGCGCCAAGTTCAACAGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGACAGGCCCAAAGATCCTTCAGAAGCACATAAGAATGATGATGTCAACATCCTTTTAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCGGCTGCAAAAGCAGTTGCGGAGGCAGAGACTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAGGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGA

>Glyma.17g160500.2 sequence-type=CDS polypeptide=Glyma.17g160500.2.p locus=Glyma.17g160500 ID=Glyma.17g160500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCACTGAAAGCTGGTGTACTCAAGCATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATTTTGCATATGCGTTCGAATGTAGATCTTAAGGATAAATGGAGGAATATAAACGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTGCCAGCCCCCAAAATTGACAATAACCATATGGCCTTGAGTACCGTAGTTCGACATGATGAAGTTCTTGATACTAAACCCTTGGCAGTTTCTGGTGGACCATTGCAATCTACCAATTTGAAAGAACAAATATCTAGGTTGGTGGATAATCATATATTAGAGGCAATTGTCTACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTTTCCACCAAATCTCAGTAAACTACTGCCAGCCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGATTGCGCCAAGTTCAACAGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGACAGGCCCAAAGATCCTTCAGAAGCACATAAGAATGATGATGTCAACATCCTTTTAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCGGCTGCAAAAGCAGTTGCGGAGGCAGAGACTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAGGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGA

>Glyma.17g160500.3 sequence-type=CDS polypeptide=Glyma.17g160500.3.p locus=Glyma.17g160500 ID=Glyma.17g160500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCACTGAAAGCTGGTGTACTCAAGCATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATTTTGCATATGCGTTCGAATGTAGATCTTAAGGATAAATGGAGGAATATAAACGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTGCCAGCCCCCAAAATTGACAATAACCATATGGCCTTGAGTACCGTAGTTCGACATGATGAAGTTCTTGATACTAAACCCTTGGCAGTTTCTGGTGGACCATTGCAATCTACCAATTTGAAAGAACAAATATCTAGGTTGGTGGATAATCATATATTAGAGGCAATTGTCTACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTTTCCACCAAATCTCAGTAAACTACTGCCAGCCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGATTGCGCCAAGTTCAACAGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGACAGGCCCAAAGATCCTTCAGAAGCACATAAGAATGATGATGTCAACATCCTTTTAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCGGCTGCAAAAGCAGTTGCGGAGGCAGAGACTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAGGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGA

Predicted protein sequences of Glyma.17g160500

Limit To All Plant Sequences

>Glyma.17g160500.1.p sequence-type=predicted peptide transcript=Glyma.17g160500.1 locus=Glyma.17g160500 ID=Glyma.17g160500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILHMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTVVRHDEVLDTKPLAVSGGPLQSTNLKEQISRLVDNHILEAIVYMKEQKGSDKAAIASFIEEKYRFPPNLSKLLPAKLKHMVASGKIIKEKHKYRIAPSSTVSEKRRCSSLVLLEDRPKDPSEAHKNDDVNILLKSQIDAEISKVKGLTAQEAAAAAAKAVAEAETAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHI*

>Glyma.17g160500.2.p sequence-type=predicted peptide transcript=Glyma.17g160500.2 locus=Glyma.17g160500 ID=Glyma.17g160500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILHMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTVVRHDEVLDTKPLAVSGGPLQSTNLKEQISRLVDNHILEAIVYMKEQKGSDKAAIASFIEEKYRFPPNLSKLLPAKLKHMVASGKIIKEKHKYRIAPSSTVSEKRRCSSLVLLEDRPKDPSEAHKNDDVNILLKSQIDAEISKVKGLTAQEAAAAAAKAVAEAETAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHI*

>Glyma.17g160500.3.p sequence-type=predicted peptide transcript=Glyma.17g160500.3 locus=Glyma.17g160500 ID=Glyma.17g160500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILHMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTVVRHDEVLDTKPLAVSGGPLQSTNLKEQISRLVDNHILEAIVYMKEQKGSDKAAIASFIEEKYRFPPNLSKLLPAKLKHMVASGKIIKEKHKYRIAPSSTVSEKRRCSSLVLLEDRPKDPSEAHKNDDVNILLKSQIDAEISKVKGLTAQEAAAAAAKAVAEAETAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHI*

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