Glyma.17g160400

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Report for Sequence Feature Glyma.17g160400

Feature Type:	gene_model
Chromosome:	Gm17
Start:	13914956
stop:	13919712
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g160400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67590.1	AT	NADH-ubiquinone oxidoreductase-related	JGI	N/A	IEA
GO:0022900	GO-bp	electron transport chain	EnsemblGenomes	N/A	IEA
GO:0022900	GO-bp	electron transport chain	JGI	N/A	IEA
GO:0016651	GO-mf	oxidoreductase activity, acting on NAD(P)H	EnsemblGenomes	N/A	IEA
GO:0016651	GO-mf	oxidoreductase activity, acting on NAD(P)H	JGI	N/A	IEA
KOG3389	KOG	NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit	JGI	N/A	IEA
PTHR12219	Panther	NADH-UBIQUINONE OXIDOREDUCTASE	JGI	N/A	IEA
PTHR12219:SF8	Panther	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 4, MITOCHONDRIAL	JGI	N/A	IEA
PF04800	PFAM	ETC complex I subunit conserved region	JGI	N/A	IEA
PWY-3781	SoyCyc9	aerobic respiration I (cytochrome c)	Plant Metabolic Network		ISS
PWY-4302	SoyCyc9	aerobic respiration III (alternative oxidase pathway)	Plant Metabolic Network		ISS
PWY-5083	SoyCyc9	NAD/NADH phosphorylation and dephosphorylation	Plant Metabolic Network		ISS
GN7V-48671	SoyCyc9-rxn	NADH:ubiquinone reductase (H⁺-translocating)	Plant Metabolic Network		ISS

Expression Patterns of Glyma.17g160400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g160400 not represented in the dataset	Glyma.17g160400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g160400

Paralog	Evidence	Comments
Glyma.05g106100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g160400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g17360	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.17g160400

Limit To All Plant Sequences

>Glyma.17g160400.1 sequence-type=CDS polypeptide=Glyma.17g160400.1.p locus=Glyma.17g160400 ID=Glyma.17g160400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAATACCTTACAACGCGCCCTTCGCGCCACCATGGCCCGGCCGTTCTCCACCGGCGCATTGGCCGAAATTAAGCGAGGCGAGATCGGAATGGTTTCTGGAATTCCTGAAGAACACCTTCGTAGGAGGGTTCTAATTTACTCTCCTGCTAGAACTGCATCTCAACAAGGATCTGGAAAGGTTGGAAGATGGAAGATCAACTTCTTATCAACCCAAAAGTGGGAAAATCCACTGATGGGCTGGACATCCACTGGGGACCCCTACTCTCATGTTGGTGATTCTGCCTTGACTTTTGATAGCGAACAAGCAGCAAAAGCATTTGCAGAGAAACATGGTTGGGAGTATTCGGTCAAGAAGCCCCACACACCATTGCTGAAGGTTAAATCATACGCGGACAATTTTAAATGGAAGGGCCCCCCCAAATCTGGTGAAGAGTGA

Predicted protein sequences of Glyma.17g160400

Limit To All Plant Sequences

>Glyma.17g160400.1.p sequence-type=predicted peptide transcript=Glyma.17g160400.1 locus=Glyma.17g160400 ID=Glyma.17g160400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANTLQRALRATMARPFSTGALAEIKRGEIGMVSGIPEEHLRRRVLIYSPARTASQQGSGKVGRWKINFLSTQKWENPLMGWTSTGDPYSHVGDSALTFDSEQAAKAFAEKHGWEYSVKKPHTPLLKVKSYADNFKWKGPPKSGEE*

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