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Report for Sequence Feature Glyma.17g150100

Feature Type:gene_model
Chromosome:Gm17
Start:12439055
stop:12442678
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g150100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17090.1AT chloroplast beta-amylase JGI N/AIEA
GO:0000272GO-bp polysaccharide catabolic process EnsemblGenomesN/AIEA
GO:0000272GO-bp polysaccharide catabolic process JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0016161GO-mf beta-amylase activity EnsemblGenomesN/AIEA
GO:0016161GO-mf beta-amylase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016798GO-mf hydrolase activity, acting on glycosyl bonds EnsemblGenomesN/AIEA
GO:0102229GO-mf amylopectin maltohydrolase activity EnsemblGenomesN/AIEA
PF01373PFAM Glycosyl hydrolase family 14 JGI N/AIEA
PWY-6724SoyCyc9 starch degradation II Plant Metabolic Network ISS
GN7V-48357SoyCyc9-rxn β-amylase Plant Metabolic Network ISS

Proteins Associated with Glyma.17g150100
LocusGene SymbolProtein Name
BMY2 Beta-amylase 2

Expression Patterns of Glyma.17g150100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g150100
ParalogEvidenceComments
Glyma.05g068000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g150100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g16020 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g150100
>Glyma.17g150100.1 sequence-type=CDS polypeptide=Glyma.17g150100.1.p locus=Glyma.17g150100 ID=Glyma.17g150100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTAACACTTCGTTCTTCAACTTCTTTTATTAATCAGAAGGAAACCAAAGTCCTCAAAACTTCTGACAATGCCCCTGCAATAGTTAGTTTTTCAAAATTCAAGCCATCATCATCATTGTTCCGGCTCCGGGCAAAAAATTCCATGCAAGAAGCTCATCACACTCGTGAGAAATGGGAGAAGGTGCTGGCTCCGTCGGTCGCACATAGCCACAATGATTCAAAGAGAGTACCTGTGTATGTGATGTTGCCATTAGACACAGTAACAATGGGAGGAAGCTTGAACAAGCCCAGAGCGATGAATGCGAGTTTGATGGCCCTGAAGAGTGCAGGGGTTGAAGGTGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAGAAAGAAGGGCCTTTGAAGTACAACTGGGAACCCTATGCTGAACTTGTGCAGATGCTGCAAATGCATGGCTTGAAGCTTCAAGTTGTTATGTCTTTCCATCAGTGTGGGGGAAATGTTGGAGACAATTGCAGCATTCCTCTACCACCATGGGTGTTGGAAGAAATCAGCAAGAACCCTGAGCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCCTTGGGCTGTGATTCGGTTCCTGTTCTAAATGGAAGAACTCCTCTCCAAGTGTACTCTGACTACATGAGAAGCTTTCGTGACAAATTCAGAGATTACTTGGGCAGTGTTATCGTGGAAATACAATTGGGAATGGGTCCTTGTGGAGAGCTCAGATATCCATCTTATCCAGAAACCAATGGAACTTGGAGGTTTCCCGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCATCCTTGGCAGCAGCAGCCGAAGACATTGGAAAGAAAGAATGGGGAGGAGGTGGACCCCATGACTCAGGCCAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAAAAGGGAAGGAACATGGAACACTGAATATGGACAGTTCTTTCTGGAATGGTACTCCGGTAAATTGCTGGAACACGGTGAGAGGATCCTTGTATCTGCCAAAGGAATATTTGAAACAACTGGGGTGAAACTATCAGGGAAAGTTGCAGGAATCCACTGGCATTACAGAGCAAGATCTCACGCAGCTGAACTAACCGCTGGCTACTACAACACACGAAATAACGATGGATATCTGCCTATAGCAAGGATGCTCGCAAAACATGGAGTTGTCTTCAATTTCACCTGCATGGAAATGAAGGACAGAGAGCAGCCAGACTTTGCAAACTGCTCACCTGAAGGGTTAGTTCACCAGGTGAAGATGGCAACAACAACAGCTAGAGCAGAGCTTGCGGGGGAAAATGCATTGGAGAGATATGATGCAGATGCATATGCTCAAGTTTTATCAACAAGTAAGTCAGAATCCGGCAGTGGATTGGCTGCATTCACATATCTAAGAATGAACAAGAGGTTGTTTGAAGCTGACAACTGGCGGCACCTAGTGGATTTCGTAAGAAGCATGTCTGAGGGTGGTCGGAGAGAGAGACTTCCGGCAGCTGATTCCCATGGGAGTGATCTTTATGTTGGGCACATCAAAGCAACACAGGAAAAGCACACACAAGAGGCTGCTCTTGTGTAA
Predicted protein sequences of Glyma.17g150100
>Glyma.17g150100.1.p sequence-type=predicted peptide transcript=Glyma.17g150100.1 locus=Glyma.17g150100 ID=Glyma.17g150100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALTLRSSTSFINQKETKVLKTSDNAPAIVSFSKFKPSSSLFRLRAKNSMQEAHHTREKWEKVLAPSVAHSHNDSKRVPVYVMLPLDTVTMGGSLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKEGPLKYNWEPYAELVQMLQMHGLKLQVVMSFHQCGGNVGDNCSIPLPPWVLEEISKNPELVYTDRSGRRNPEYISLGCDSVPVLNGRTPLQVYSDYMRSFRDKFRDYLGSVIVEIQLGMGPCGELRYPSYPETNGTWRFPGIGEFQCYDKYMKASLAAAAEDIGKKEWGGGGPHDSGQYNQFPEDTGFFKREGTWNTEYGQFFLEWYSGKLLEHGERILVSAKGIFETTGVKLSGKVAGIHWHYRARSHAAELTAGYYNTRNNDGYLPIARMLAKHGVVFNFTCMEMKDREQPDFANCSPEGLVHQVKMATTTARAELAGENALERYDADAYAQVLSTSKSESGSGLAAFTYLRMNKRLFEADNWRHLVDFVRSMSEGGRRERLPAADSHGSDLYVGHIKATQEKHTQEAALV*






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