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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G07440.1 | AT | glutamate dehydrogenase 2 | JGI | N/A | IEA |
| GO:0006520 | GO-bp | cellular amino acid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006520 | GO-bp | cellular amino acid metabolic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016639 | GO-mf | oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor | EnsemblGenomes | N/A | IEA |
| KOG2250 | KOG | Glutamate/leucine/phenylalanine/valine dehydrogenases | JGI | N/A | IEA |
| PTHR11606 | Panther | GLUTAMATE DEHYDROGENASE | JGI | N/A | IEA |
| PF00208 | PFAM | Glutamate/Leucine/Phenylalanine/Valine dehydrogenase | JGI | N/A | IEA |
| PF02812 | PFAM | Glu/Leu/Phe/Val dehydrogenase, dimerisation domain | JGI | N/A | IEA |
| ALACAT2-PWY | SoyCyc9 | L-alanine degradation II (to D-lactate) | Plant Metabolic Network | ISS | |
| GLUTAMATE-DEG1-PWY | SoyCyc9 | L-glutamate degradation I | Plant Metabolic Network | ISS | |
| GLUTAMATE-SYN2-PWY | SoyCyc9 | L-glutamate biosynthesis II | Plant Metabolic Network | ISS | |
| GLUTSYNIII-PWY | SoyCyc9 | L-glutamate biosynthesis III | Plant Metabolic Network | ISS | |
| GN7V-43745 | SoyCyc9-rxn | glutamate dehydrogenase [NAD(P)+] | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| GDH2 | glutamate dehydrogenase 2 |
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Glyma.17g148000 not represented in the dataset |
Glyma.17g148000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g066200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g15740 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g148000.2 sequence-type=transcript locus=Glyma.17g148000 ID=Glyma.17g148000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TGAATGCCTAGTCTCTCTTCTTGACTTTCTCCAATATACATCCTCAGCAAATGCTACCAACCGCAACTTTCAACGTGCAGCTCGCATTCTCGGTTTGGATTCCAAGCTTGAGAAGAGTCTCCTCATACCCTTCAGAGAAATCAAAGTTGAATGCACGATCCCCAAGGATGATGGAACTCTGGTTTCCTATGTGGGATTCAGGATCCAACATGATAATGCCCGTGGTCCTATGAAGGGAGGGATTCGTTATCATCCTGAGGTTGACCCTGATGAAGTGAATGCTCTAGCTCAGCTGATGACATGGAAGACTGCTGTAGCAGACATTCCTTATGGAGGAGCAAAGGGTGGGATCGGCTGCAACCCAAGGGATCTGAGTATCAGTGAGTTAGAACGTCTAACTCGGGTTTTCACCCAAAAGATTCATGATCTCATTGGCGTTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAATGCTCAGACCATGGCATGGATTCTTGATGAATATTCAAAGTTTCATGGGCATTCACCTGCAGTTGTGACAGGGAAGCCTATTGATCTTGGAGGTTCGTTGGGGAGGGAGGCTGCAACAGGTCTCGGAGTGGTTTTTGCAACTGAGGCTTTATTTGCTGAATATGGGAAGTCAATTTCGGATCACACATTTGTCATCCAGGGCTTTGGAAATGTGGGCACGTGGGCTGCTAAGTCTATTTTTGAGAGGGGGGGAAAGGTGATTGCTGTGAGTGACATCAGTGGTGCTATCAAAAACCTAAATGGAATCGACATCCTTGCCCTTCTGAAACACAAGGATGGCAATGGTGGAGTCTTGAAGGACTTCCCAGGTGCAGAAGCCATGGATCCAGATGAATTGCTTGTTCATGAATGCGATGTTCTTGTCCCTTGTGCCTTGGGTGGAGTTCTAAACAAGGAAAATGCTGCTGATGTGAAGGCAAAATTTATAATAGAAGCAGCAAATCACCCCACTGACCCTGATGCGGATGGGATCTTGTCTAAGAAAGGAGTCATTATATTACCTGATATTTATGCCAATGCTGGCGGAGTGACTGTGAGCTACTTTGAATGGGTTCAGAATATTCAAGGTTTCATGTGGGATGAAGAGAAAGTGAACCGTGAGCTGAAGAAGTACATGACCAAAGCTTTCCAGGATATCAAGGCAATGTGTAAAATTCACAACTGTGACCTGCGAATGGGGGCATTCACTCTAGGAGTGAACCGTGTTGCCCGTGCTACCCTTTTGAGGGGTTGGGAAGCATAGGTTTACTACATGAGAAGTAGGATTTTACAAGGTTGTGTTTTTCTTTCTTTATTGTCTTAGTGTTAGTCAAACAATAACAATATTAGTCATGTGAGACTTGCCAATAAAACATTATTCTTGCCATTGGGTCCTGCGAATGGAAGTTACTACCATATTTGTTAAAAATATTTGATGCATC
>Glyma.17g148000.1 sequence-type=CDS polypeptide=Glyma.17g148000.1.p locus=Glyma.17g148000 ID=Glyma.17g148000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAACGCTCTTGCAGCTACCAACCGCAACTTTCAACGTGCAGCTCGCATTCTCGGTTTGGATTCCAAGCTTGAGAAGAGTCTCCTCATACCCTTCAGAGAAATCAAAGTTGAATGCACGATCCCCAAGGATGATGGAACTCTGGTTTCCTATGTGGGATTCAGGATCCAACATGATAATGCCCGTGGTCCTATGAAGGGAGGGATTCGTTATCATCCTGAGGTTGACCCTGATGAAGTGAATGCTCTAGCTCAGCTGATGACATGGAAGACTGCTGTAGCAGACATTCCTTATGGAGGAGCAAAGGGTGGGATCGGCTGCAACCCAAGGGATCTGAGTATCAGTGAGTTAGAACGTCTAACTCGGGTTTTCACCCAAAAGATTCATGATCTCATTGGCGTTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAATGCTCAGACCATGGCATGGATTCTTGATGAATATTCAAAGTTTCATGGGCATTCACCTGCAGTTGTGACAGGGAAGCCTATTGATCTTGGAGGTTCGTTGGGGAGGGAGGCTGCAACAGGTCTCGGAGTGGTTTTTGCAACTGAGGCTTTATTTGCTGAATATGGGAAGTCAATTTCGGATCACACATTTGTCATCCAGGGCTTTGGAAATGTGGGCACGTGGGCTGCTAAGTCTATTTTTGAGAGGGGGGGAAAGGTGATTGCTGTGAGTGACATCAGTGGTGCTATCAAAAACCTAAATGGAATCGACATCCTTGCCCTTCTGAAACACAAGGATGGCAATGGTGGAGTCTTGAAGGACTTCCCAGGTGCAGAAGCCATGGATCCAGATGAATTGCTTGTTCATGAATGCGATGTTCTTGTCCCTTGTGCCTTGGGTGGAGTTCTAAACAAGGAAAATGCTGCTGATGTGAAGGCAAAATTTATAATAGAAGCAGCAAATCACCCCACTGACCCTGATGCGGATGGGATCTTGTCTAAGAAAGGAGTCATTATATTACCTGATATTTATGCCAATGCTGGCGGAGTGACTGTGAGCTACTTTGAATGGGTTCAGAATATTCAAGGTTTCATGTGGGATGAAGAGAAAGTGAACCGTGAGCTGAAGAAGTACATGACCAAAGCTTTCCAGGATATCAAGGCAATGTGTAAAATTCACAACTGTGACCTGCGAATGGGGGCATTCACTCTAGGAGTGAACCGTGTTGCCCGTGCTACCCTTTTGAGGGGTTGGGAAGCATAG >Glyma.17g148000.2 sequence-type=CDS polypeptide=Glyma.17g148000.2.p locus=Glyma.17g148000 ID=Glyma.17g148000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGGGAGGGATTCGTTATCATCCTGAGGTTGACCCTGATGAAGTGAATGCTCTAGCTCAGCTGATGACATGGAAGACTGCTGTAGCAGACATTCCTTATGGAGGAGCAAAGGGTGGGATCGGCTGCAACCCAAGGGATCTGAGTATCAGTGAGTTAGAACGTCTAACTCGGGTTTTCACCCAAAAGATTCATGATCTCATTGGCGTTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAATGCTCAGACCATGGCATGGATTCTTGATGAATATTCAAAGTTTCATGGGCATTCACCTGCAGTTGTGACAGGGAAGCCTATTGATCTTGGAGGTTCGTTGGGGAGGGAGGCTGCAACAGGTCTCGGAGTGGTTTTTGCAACTGAGGCTTTATTTGCTGAATATGGGAAGTCAATTTCGGATCACACATTTGTCATCCAGGGCTTTGGAAATGTGGGCACGTGGGCTGCTAAGTCTATTTTTGAGAGGGGGGGAAAGGTGATTGCTGTGAGTGACATCAGTGGTGCTATCAAAAACCTAAATGGAATCGACATCCTTGCCCTTCTGAAACACAAGGATGGCAATGGTGGAGTCTTGAAGGACTTCCCAGGTGCAGAAGCCATGGATCCAGATGAATTGCTTGTTCATGAATGCGATGTTCTTGTCCCTTGTGCCTTGGGTGGAGTTCTAAACAAGGAAAATGCTGCTGATGTGAAGGCAAAATTTATAATAGAAGCAGCAAATCACCCCACTGACCCTGATGCGGATGGGATCTTGTCTAAGAAAGGAGTCATTATATTACCTGATATTTATGCCAATGCTGGCGGAGTGACTGTGAGCTACTTTGAATGGGTTCAGAATATTCAAGGTTTCATGTGGGATGAAGAGAAAGTGAACCGTGAGCTGAAGAAGTACATGACCAAAGCTTTCCAGGATATCAAGGCAATGTGTAAAATTCACAACTGTGACCTGCGAATGGGGGCATTCACTCTAGGAGTGAACCGTGTTGCCCGTGCTACCCTTTTGAGGGGTTGGGAAGCATAG
>Glyma.17g148000.1.p sequence-type=predicted peptide transcript=Glyma.17g148000.1 locus=Glyma.17g148000 ID=Glyma.17g148000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNALAATNRNFQRAARILGLDSKLEKSLLIPFREIKVECTIPKDDGTLVSYVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCNPRDLSISELERLTRVFTQKIHDLIGVQRDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVVFATEALFAEYGKSISDHTFVIQGFGNVGTWAAKSIFERGGKVIAVSDISGAIKNLNGIDILALLKHKDGNGGVLKDFPGAEAMDPDELLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPDADGILSKKGVIILPDIYANAGGVTVSYFEWVQNIQGFMWDEEKVNRELKKYMTKAFQDIKAMCKIHNCDLRMGAFTLGVNRVARATLLRGWEA* >Glyma.17g148000.2.p sequence-type=predicted peptide transcript=Glyma.17g148000.2 locus=Glyma.17g148000 ID=Glyma.17g148000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCNPRDLSISELERLTRVFTQKIHDLIGVQRDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVVFATEALFAEYGKSISDHTFVIQGFGNVGTWAAKSIFERGGKVIAVSDISGAIKNLNGIDILALLKHKDGNGGVLKDFPGAEAMDPDELLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPDADGILSKKGVIILPDIYANAGGVTVSYFEWVQNIQGFMWDEEKVNRELKKYMTKAFQDIKAMCKIHNCDLRMGAFTLGVNRVARATLLRGWEA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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