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Report for Sequence Feature Glyma.17g142300

Feature Type:gene_model
Chromosome:Gm17
Start:11560146
stop:11561671
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g142300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G60580.1AT C2H2-like zinc finger protein JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
PTHR11389Panther ZINC FINGER PROTEIN JGI N/AIEA
PTHR11389:SF378Panther JGI N/AIEA

Proteins Associated with Glyma.17g142300
LocusGene SymbolProtein Name
ZFP5 zinc finger protein ZAT4-like

Expression Patterns of Glyma.17g142300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g142300
ParalogEvidenceComments
Glyma.05g059800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g142300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g15140 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g142300
>Glyma.17g142300.1 sequence-type=CDS polypeptide=Glyma.17g142300.1.p locus=Glyma.17g142300 ID=Glyma.17g142300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATAGACACAAATGCAAGCTTTGTTCAAGGTCTTTCAGCAATGGCAGAGCCCTTGGTGGGCACATGAAGGCTCACCTTGCTTCTCTCCCTCTCCCTCTCCCTCCAAAGCTTCACTCTTGTTTCTCTTCCTCTGACTCAGAACAAGAACAATCTTTAAGGGAGAATCCTAAGAAAACCTTGAGGATTCTGGATCCTGAAGACAGAGAGAGCGAGACAGAGTCTAATAAGAACCCGACTCGTCAACGATCCAAGCGCAACTGGAAATCTACCATGCCCAAGCTCAGCCTCGGACACCCCGAAGCCGAACCTCTCAGCTCCGTCTCCGACACCTCCCCCGAAGAAGACCTCGCCATGTGCCTCATGATGCTCTCCCGCGACACGTGGCAGGAACACAAACTCGCCAATGCAGGTCCACCCAAGACTCGCTGCAGCAGCGGATCAGAGATCAAGCTCAAGAACAAAGTCCGCTCCAAGCACCTCTGCCACGCTTGTCACAAATCCTTTCGATCCTCTCGCGCTCTTGGGAGCCACAGAACCCTGTGCTCTCCCCGTCAGGAAGCCCAAAATAACAGCATCATTAGTAATAACAACATTAAGGTTTTTGAATGCCCCTTCTGTTACAAGCTGTTTGGTTCTGGCCAAGCGCTCGGTGGACACAAGAGATCTCACCTAATTCCTTCTTCCTCTTCAACCGTTAATCATTCTGTCAAGTTGAAACAGAGCTTCATAGATCTCAACTTGCCTGCTCCGGCCGAAGACGACGATCTTAGCGTTGTTTCTGATGCCTAA
Predicted protein sequences of Glyma.17g142300
>Glyma.17g142300.1.p sequence-type=predicted peptide transcript=Glyma.17g142300.1 locus=Glyma.17g142300 ID=Glyma.17g142300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDRHKCKLCSRSFSNGRALGGHMKAHLASLPLPLPPKLHSCFSSSDSEQEQSLRENPKKTLRILDPEDRESETESNKNPTRQRSKRNWKSTMPKLSLGHPEAEPLSSVSDTSPEEDLAMCLMMLSRDTWQEHKLANAGPPKTRCSSGSEIKLKNKVRSKHLCHACHKSFRSSRALGSHRTLCSPRQEAQNNSIISNNNIKVFECPFCYKLFGSGQALGGHKRSHLIPSSSSTVNHSVKLKQSFIDLNLPAPAEDDDLSVVSDA*






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