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Report for Sequence Feature Glyma.17g137600

Feature Type:gene_model
Chromosome:Gm17
Start:11107375
stop:11111302
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g137600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G62750.1AT Translation elongation factor EFG/EF2 protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006414GO-bp translational elongation EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003746GO-mf translation elongation factor activity EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
KOG0465 KOG Mitochondrial elongation factor JGI N/AIEA
PTHR23115Panther TRANSLATION FACTOR JGI N/AIEA
PTHR23115:SF84Panther JGI N/AIEA
PF00009PFAM Elongation factor Tu GTP binding domain JGI N/AIEA
PF00679PFAM Elongation factor G C-terminus JGI N/AIEA
PF03144PFAM Elongation factor Tu domain 2 JGI N/AIEA
PF03764PFAM Elongation factor G, domain IV JGI N/AIEA

Proteins Associated with Glyma.17g137600
LocusGene SymbolProtein Name
FUSA1 elongation factor G-1

Expression Patterns of Glyma.17g137600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g137600
ParalogEvidenceComments
Glyma.05g055500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g137600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g14650 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g137600
>Glyma.17g137600.1 sequence-type=CDS polypeptide=Glyma.17g137600.1.p locus=Glyma.17g137600 ID=Glyma.17g137600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGCAGAGTCATCACTGAGGGTGGCGACTCCCACTCTTTGCAACCTCAATGGGTCTCAGAGACGACCAACCACCACCACTCTCTCTCCGCTTCGCTTCATGGGTTTTCGTCCTCGACCCTCCTCTCACTCTCTCACCTCCTCTTCCCTTTCACACTTCTTCGGGAGCACAAGAATTCACTCCAATTCTTCTTCTTCTTATTCTTCCATTTCACGCCAACATGCTCCGAGAAGAAACTTCTCTGTTTTCGCCATGTCTGCTGATGACGCAAAGCGCAGTGTTCCATTGAAGGATTATCGCAACATCGGTATCATGGCTCACATAGATGCTGGAAAGACTACTACAACAGAACGAATTTTGTACTATACTGGAAGGAACTACAAAATTGGAGAGGTGCATGAGGGAACAGCAACCATGGACTGGATGGAACAAGAACAAGAGAGGGGGATTACCATTACTTCTGCTGCAACCACTACATTTTGGAACAAGCACCGGATCAACATTATTGATACCCCTGGTCACGTTGACTTCACCTTAGAAGTGGAGCGTGCTCTTAGGGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTTGCTGGCGTGGAGCCGCAATCGGAAACTGTGTGGAGGCAGGCTGATAAATATGGAGTCCCGCGAATTTGTTTTGTCAATAAAATGGACCGTCTTGGAGCAAACTTTTATAGAACAAGAGACATGATAGTAACGAATTTGGGTGCTAAACCACTTGTAATTCAGTTACCAATTGGTTCAGAAGATAACTTTAAGGGAGTTATAGACCTTGTTAGGAATAAGGCTATAGTTTGGTCTGGAGAAGAGCTGGGTGCCAAGTTTGATATTGTAGATATTCCAGAAGATCTTCAAGAGCAGGCTCAGGATTACCGTGCCCAGATGATAGAAAACATAGTTGAGTTTGATGACCAGGCTATGGAGAACTACCTGGAAGGAATTGAACCGGATGAGGAAACTATAAAAAAATTAATTAGGAAGGGAACAATATCAGCCAGTTTTGTGCCAGTGATGTGTGGCTCGGCTTTCAAAAACAAGGGAGTCCAACCATTGCTCGATGCAGTAGTGGATTATCTACCATCACCACTTGACTTGCCAGCAATGAAGGGCAGTGACCCTGAAAACCCTGAAGCAACAATAGAGAGACTAGCAAGTGATGATGAACCATTTGCTGGACTAGCTTTTAAGATCATGAGTGATCCATTTGTAGGTTCCCTTACGTTTGTCAGGGTGTATGCTGGAAAGCTAGGTGCTGGGTCTTATGTACTCAATGCAAACAAAGGGAAAAAGGAGAGAATTGGTAGACTTTTAGAAATGCATGCAAACAGCAGAGATGATGTTAAAGTGGCTTTAGCTGGTGATATTATTGCTCTTGCAGGTTTGAAAGATACTATTACAGGTGAAACATTGTGTGACCCTGATAATCCAATCGTGCTCGAGCGGATGGACTTCCCTGATCCTGTTATTAAGGTTGCAATTGAACCGAAAACTAAAGCTGATGTTGACAAGATGGCAACTGGTTTAATCAAACTTGCACAGGAAGACCCTTCTTTCCACTTCTCCCGTGATGAAGAGATAAACCAGACAGTAATTGAAGGAATGGGAGAATTACATCTTGAAATCATTGTTGATCGGCTCAAAAGAGAATTTAAGGTGGAAGCTAACGTTGGTGCCCCCCAAGTAAACTACAGGGAAAGCATTTCCAAAATCTCAGAAGTGAAGTATGTGCACAAGAAACAATCAGGTGGACAGGGTCAGTTTGCAGATATCACTGTCCGGTTTGAACCCATGGACCCAGGTAGTGGATATGAGTTCAAGAGTGAAATCAAAGGAGGTGCTGTACCAAGAGAATACATTCCTGGTGTGATGAAAGGATTGGAAGAGTGTATGAGCAATGGTGTGCTTGCTGGCTTTCCGGTCGTTGATGTACGAGCAGTACTCACAGATGGTTCTTACCATGATGTAGATTCAAGCGTGTTGGCTTTCCAGTTGGCAGCAAGAGGAGCTTTTAGGGAAGGAATAAGAAAAGCTGGACCGAGGATGCTTGAGCCTATAATGAAGGTTGAAGTTGTTACTCCTGAAGAACATCTAGGTGATGTAATTGGGGATCTCAACTCAAGAAGAGGACAGATCAACAGTTTTGGTGACAAACCTGGTGGCCTTAAGGTGGTTGATTCCCTGGTACCTCTTGCTGAGATGTTCCAGTATGTCAGCACACTCAGAGGGATGACAAAGGGCCGTGCATCCTACACAATGCAATTAGCCATGTTTGATGTGGTGCCTCAGCACATTCAGAACCAACTTGCCACCAAAGAGCAAGAAGTTGCCGCTTAA
Predicted protein sequences of Glyma.17g137600
>Glyma.17g137600.1.p sequence-type=predicted peptide transcript=Glyma.17g137600.1 locus=Glyma.17g137600 ID=Glyma.17g137600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAESSLRVATPTLCNLNGSQRRPTTTTLSPLRFMGFRPRPSSHSLTSSSLSHFFGSTRIHSNSSSSYSSISRQHAPRRNFSVFAMSADDAKRSVPLKDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFYRTRDMIVTNLGAKPLVIQLPIGSEDNFKGVIDLVRNKAIVWSGEELGAKFDIVDIPEDLQEQAQDYRAQMIENIVEFDDQAMENYLEGIEPDEETIKKLIRKGTISASFVPVMCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGSDPENPEATIERLASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGKLGAGSYVLNANKGKKERIGRLLEMHANSRDDVKVALAGDIIALAGLKDTITGETLCDPDNPIVLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKISEVKYVHKKQSGGQGQFADITVRFEPMDPGSGYEFKSEIKGGAVPREYIPGVMKGLEECMSNGVLAGFPVVDVRAVLTDGSYHDVDSSVLAFQLAARGAFREGIRKAGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDSLVPLAEMFQYVSTLRGMTKGRASYTMQLAMFDVVPQHIQNQLATKEQEVAA*






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