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Report for Sequence Feature Glyma.17g130900

Feature Type:gene_model
Chromosome:Gm17
Start:10477047
stop:10481433
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G23060.1AT IQ-domain 22 JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR13140Panther MYOSIN JGI N/AIEA
PTHR13140:SF72Panther JGI N/AIEA
PF00612PFAM IQ calmodulin-binding motif JGI N/AIEA

LocusGene SymbolProtein Name
IQD59 protein IQ-DOMAIN 59

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.05g049000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma17g14000 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.17g130900.2 sequence-type=transcript locus=Glyma.17g130900 ID=Glyma.17g130900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGCTTCTTCAGACTGAGGAGACGAAATATGTTTGATTTTGATGTTGCCTTTAGATGTGTTTGTATTGTATGATTCTTCCAAGACAAATAAAAACTATGGGGTTTTTCCATCTGCAAGCTCTGGGGTCCAACGTGGACCCTGTCCCTGCCTCTTGTTTGGCCATCTTAATCGCAAGGAGAGCACTGCGAGCATTAAAGGGATTGGTGAAGTTGCAAGCATTGGTGAGAGGCCACATTGAGAGAAAACGGACGGCAGAGTGGCTGAAAAGATTGCAAGCACTCTTACATGCACAGACCCAAGTTTCTGCAGGGTTGACCCTGCATGCCTCACCTTCGAGTTCAAAGTTATCAAGCCACCTCCAAGGTCCAGAAACACCCGAAAAATTTGAAAGCCCCATTAGATCTAAGAGCATGAAACATGAGCACTCACCTATACTCAAGAGAAATGGCTCCAAATCCTGTGCCCTGATCAATGGCTATCAAGAGATATGTGGGAGTAGATCAGAGAGTCAAGGGAATGAACAATTATGGAACTCAGGAAGATCAATGAATAGAGCACACGGCTCCAATGATGAAAGAAATGGCAAGGTTCTTGAAGTTGATTCTGGAAAACCGCACTTCACACTAAAGCGTCGAAACCTCTCTTACTCCACAGGCTCTGATCTTTATAGTAAGAGTTTGAACAGCACAAAGGAATCAACATCTCTTCAATCTGCTCAAAGTCCATGTTGTGAGGTTCAGTCTCACAGTTACAGCTCGCAAAAAGTGAACAATGAGGTTGAGGAGAGTCCATTCTGCACTGCTGACAATAGTCCACAATACTTATCTGCCTCTTCTAAAGATGATGGCTTCAAAAGAAGCCCTTTTACTCCTACTAGAAGTGATGGCTCTAGAAGCTACATTCGCGGTTACCCTGATTATCCTAGTTACATGGCATGCACTGAATCTTCAAAGGCAAAGGCCAGATCTCTGAGTGCACCAAAACAAAGGCCTCAAAGTGAGAGGTCTGGTTCATCGGATAGATACTCACTCAATGGATTTGATATGTCAAGATTGGCCACTCAAAGGGCAATGCAAGCAAGCTTCACCAACAAAGCATATCCAGGTTCTGGTCGTTTGGACAAGCTTGGTATGCCTGTGGGGTACAGATTCTGATTGAGTTATGTTTATGGTAAGAGGGTTATTTTGTATCTTTTATTTTTCATAGTCTTAAAGTCTTAATATCTGATCTTGCTAACCAACCGGCTGTACTTTGAGCTTCCATTGCGATTTTGTGTCAGCATTAGAAATCTACAACCAAATTAAGTGCATACTGCTAAGTCTCAACTTTCAAGTCATTTTATTACTTGGATAAACTGTGTAAAAGAATTATTATCTTTGCCTTTCAAAAGTTTAAGACTTGTGGCTGTCAGTTACATTGAACGCTTTATTTATAATATCTTACCTATCTTTTCA

>Glyma.17g130900.1 sequence-type=CDS polypeptide=Glyma.17g130900.1.p locus=Glyma.17g130900 ID=Glyma.17g130900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTAAGGCGTCGAAGTGGTTTCGCGGGCTTCTTGGTCTCAAAAAAACAGAGTATGCCACCTCACCCGCCAAGCCTCCCAAAGAGAAACGCCGGTGGAGCTTCGTTAAATCATCATACACAGAAAAAGACAACACCACTGCCGCCACGTGTCCACCACTAAGAAACAACAACAACCACGCAATGGCAGTAGCAGCAGCCACCGCTGCGGTGGCCGAAGCGGCGGTGGCTGCCGCCGAAGCAGCCGCCGTCGTGGTGAGACTAACTAGTAACAGCGGCAGGTGCGCCGACGGCGGACCCACCCGGATTCGCCAACATTGGGCTGCTGTTAAGATTCAAGCCGCTTTTCGTGGCTGTTTGGCAAGGAGAGCACTGCGAGCATTAAAGGGATTGGTGAAGTTGCAAGCATTGGTGAGAGGCCACATTGAGAGAAAACGGACGGCAGAGTGGCTGAAAAGATTGCAAGCACTCTTACATGCACAGACCCAAGTTTCTGCAGGGTTGACCCTGCATGCCTCACCTTCGAGTTCAAAGTTATCAAGCCACCTCCAAGGTCCAGAAACACCCGAAAAATTTGAAAGCCCCATTAGATCTAAGAGCATGAAACATGAGCACTCACCTATACTCAAGAGAAATGGCTCCAAATCCTGTGCCCTGATCAATGGCTATCAAGAGATATGTGGGAGTAGATCAGAGAGTCAAGGGAATGAACAATTATGGAACTCAGGAAGATCAATGAATAGAGCACACGGCTCCAATGATGAAAGAAATGGCAAGGTTCTTGAAGTTGATTCTGGAAAACCGCACTTCACACTAAAGCGTCGAAACCTCTCTTACTCCACAGGCTCTGATCTTTATAGTAAGAGTTTGAACAGCACAAAGGAATCAACATCTCTTCAATCTGCTCAAAGTCCATGTTGTGAGGTTCAGTCTCACAGTTACAGCTCGCAAAAAGTGAACAATGAGGTTGAGGAGAGTCCATTCTGCACTGCTGACAATAGTCCACAATACTTATCTGCCTCTTCTAAAGATGATGGCTTCAAAAGAAGCCCTTTTACTCCTACTAGAAGTGATGGCTCTAGAAGCTACATTCGCGGTTACCCTGATTATCCTAGTTACATGGCATGCACTGAATCTTCAAAGGCAAAGGCCAGATCTCTGAGTGCACCAAAACAAAGGCCTCAAAGTGAGAGGTCTGGTTCATCGGATAGATACTCACTCAATGGATTTGATATGTCAAGATTGGCCACTCAAAGGGCAATGCAAGCAAGCTTCACCAACAAAGCATATCCAGGTTCTGGTCGTTTGGACAAGCTTGGTATGCCTGTGGGGTACAGATTCTGA

>Glyma.17g130900.2 sequence-type=CDS polypeptide=Glyma.17g130900.2.p locus=Glyma.17g130900 ID=Glyma.17g130900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGTTTGTATTGTATGATTCTTCCAAGACAAATAAAAACTATGGGGTTTTTCCATCTGCAAGCTCTGGGGTCCAACGTGGACCCTGTCCCTGCCTCTTGTTTGGCCATCTTAATCGCAAGGAGAGCACTGCGAGCATTAAAGGGATTGGTGAAGTTGCAAGCATTGGTGAGAGGCCACATTGAGAGAAAACGGACGGCAGAGTGGCTGAAAAGATTGCAAGCACTCTTACATGCACAGACCCAAGTTTCTGCAGGGTTGACCCTGCATGCCTCACCTTCGAGTTCAAAGTTATCAAGCCACCTCCAAGGTCCAGAAACACCCGAAAAATTTGAAAGCCCCATTAGATCTAAGAGCATGAAACATGAGCACTCACCTATACTCAAGAGAAATGGCTCCAAATCCTGTGCCCTGATCAATGGCTATCAAGAGATATGTGGGAGTAGATCAGAGAGTCAAGGGAATGAACAATTATGGAACTCAGGAAGATCAATGAATAGAGCACACGGCTCCAATGATGAAAGAAATGGCAAGGTTCTTGAAGTTGATTCTGGAAAACCGCACTTCACACTAAAGCGTCGAAACCTCTCTTACTCCACAGGCTCTGATCTTTATAGTAAGAGTTTGAACAGCACAAAGGAATCAACATCTCTTCAATCTGCTCAAAGTCCATGTTGTGAGGTTCAGTCTCACAGTTACAGCTCGCAAAAAGTGAACAATGAGGTTGAGGAGAGTCCATTCTGCACTGCTGACAATAGTCCACAATACTTATCTGCCTCTTCTAAAGATGATGGCTTCAAAAGAAGCCCTTTTACTCCTACTAGAAGTGATGGCTCTAGAAGCTACATTCGCGGTTACCCTGATTATCCTAGTTACATGGCATGCACTGAATCTTCAAAGGCAAAGGCCAGATCTCTGAGTGCACCAAAACAAAGGCCTCAAAGTGAGAGGTCTGGTTCATCGGATAGATACTCACTCAATGGATTTGATATGTCAAGATTGGCCACTCAAAGGGCAATGCAAGCAAGCTTCACCAACAAAGCATATCCAGGTTCTGGTCGTTTGGACAAGCTTGGTATGCCTGTGGGGTACAGATTCTGA

>Glyma.17g130900.1.p sequence-type=predicted peptide transcript=Glyma.17g130900.1 locus=Glyma.17g130900 ID=Glyma.17g130900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKASKWFRGLLGLKKTEYATSPAKPPKEKRRWSFVKSSYTEKDNTTAATCPPLRNNNNHAMAVAAATAAVAEAAVAAAEAAAVVVRLTSNSGRCADGGPTRIRQHWAAVKIQAAFRGCLARRALRALKGLVKLQALVRGHIERKRTAEWLKRLQALLHAQTQVSAGLTLHASPSSSKLSSHLQGPETPEKFESPIRSKSMKHEHSPILKRNGSKSCALINGYQEICGSRSESQGNEQLWNSGRSMNRAHGSNDERNGKVLEVDSGKPHFTLKRRNLSYSTGSDLYSKSLNSTKESTSLQSAQSPCCEVQSHSYSSQKVNNEVEESPFCTADNSPQYLSASSKDDGFKRSPFTPTRSDGSRSYIRGYPDYPSYMACTESSKAKARSLSAPKQRPQSERSGSSDRYSLNGFDMSRLATQRAMQASFTNKAYPGSGRLDKLGMPVGYRF*

>Glyma.17g130900.2.p sequence-type=predicted peptide transcript=Glyma.17g130900.2 locus=Glyma.17g130900 ID=Glyma.17g130900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MCLYCMILPRQIKTMGFFHLQALGSNVDPVPASCLAILIARRALRALKGLVKLQALVRGHIERKRTAEWLKRLQALLHAQTQVSAGLTLHASPSSSKLSSHLQGPETPEKFESPIRSKSMKHEHSPILKRNGSKSCALINGYQEICGSRSESQGNEQLWNSGRSMNRAHGSNDERNGKVLEVDSGKPHFTLKRRNLSYSTGSDLYSKSLNSTKESTSLQSAQSPCCEVQSHSYSSQKVNNEVEESPFCTADNSPQYLSASSKDDGFKRSPFTPTRSDGSRSYIRGYPDYPSYMACTESSKAKARSLSAPKQRPQSERSGSSDRYSLNGFDMSRLATQRAMQASFTNKAYPGSGRLDKLGMPVGYRF*







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