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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G40870.1 | AT | uridine kinase/uracil phosphoribosyltransferase 1 | JGI | N/A | IEA |
| GO:0006206 | GO-bp | pyrimidine nucleobase metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0009116 | GO-bp | nucleoside metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0009116 | GO-bp | nucleoside metabolic process | JGI | N/A | IEA |
| GO:0015937 | GO-bp | coenzyme A biosynthetic process | JGI | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0043097 | GO-bp | pyrimidine nucleoside salvage | EnsemblGenomes | N/A | IEA |
| GO:0044206 | GO-bp | UMP salvage | EnsemblGenomes | N/A | IEA |
| GO:0044211 | GO-bp | CTP salvage | EnsemblGenomes | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0004140 | GO-mf | dephospho-CoA kinase activity | JGI | N/A | IEA |
| GO:0004849 | GO-mf | uridine kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016301 | GO-mf | kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0016301 | GO-mf | kinase activity | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| KOG4203 | KOG | Armadillo/beta-Catenin/plakoglobin | JGI | N/A | IEA |
| PTHR10285 | Panther | URIDINE KINASE | JGI | N/A | IEA |
| PF00156 | PFAM | Phosphoribosyl transferase domain | JGI | N/A | IEA |
| PF00485 | PFAM | Phosphoribulokinase / Uridine kinase family | JGI | N/A | IEA |
| PWY-7183 | SoyCyc9 | pyrimidine nucleobases salvage I | Plant Metabolic Network | ISS | |
| PWY-7193 | SoyCyc9 | pyrimidine ribonucleosides salvage I | Plant Metabolic Network | ISS | |
| PWY-7196 | SoyCyc9 | superpathway of pyrimidine ribonucleosides salvage | Plant Metabolic Network | ISS | |
| PWY-7208 | SoyCyc9 | superpathway of pyrimidine nucleobases salvage | Plant Metabolic Network | ISS | |
| PWYQT-4445 | SoyCyc9 | pyrimidine salvage pathway | Plant Metabolic Network | ISS | |
| GN7V-46864 | SoyCyc9-rxn | uridine kinase | Plant Metabolic Network | ISS |
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Glyma.17g129000 not represented in the dataset |
Glyma.17g129000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g047200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g13830 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g129000.1 sequence-type=CDS polypeptide=Glyma.17g129000.1.p locus=Glyma.17g129000 ID=Glyma.17g129000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATATGGTTATAGAGGTTCTCTCCGGTGCGCACTTCTCCGGTTGGCATCCTTCTACGACGTCGTCTTGTTCTTCTCCAACATCCTCACATCATCCATTCGTCATCGGTGTCTCTGGAGGCACGGCATCGGGAAAAACCACAGTGTGTGATTTGATCATTCAGCAGCTGCAAGATCACAGAGTTGTGCTCGTTAGTCAGGATTCATTTTACCGCGGTTTGACGAATGACGAGTTGAAACGCGTTCATGAGTATAATTTTGATCATCCTAATGCATTTGATACAGAGCAACTCGTAGAAACTCTCAGTAAGCTCAAATCTGGACAGTCAGTTCAGGTTCCGTTTTACGATTTTAAGCTTCACCAGAGATCTTCTGAGAGATCCAGACAGGTCAATGCATCTGAAGTAATTATTCTGGAGGGAATATTGGTTTTTCATGAACAACGTGTCCGCAACATGATGAATATGAAGATATTTGTTGATGCAGATCCAGATGTAAGGCTTGCCCGCAGAATAAGACGGGATACTGTTGAGAGGGGTAGAGATGTTCACTCTGTACTGGAACAGTATGCAAAATTTGTTAAGCCTGCCTTCGATGATTTTATTCTTCCATCCAAAAAATATGCTGACATCATCATACCTCGCGGTGGAGACAATCTTGTAGCAATTGACTTGATTGTTCAACATATCCGCACTAAGCTTGGCCAACATAACCTCTGCAAGATATATCCAAATGTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGACAGGGACTTATCAAAGCATGATTTTGTTTTTTATTCAGATCGGCTAATTCGTGTGGTAGTGGAACATGGTCTTGGTTACTTGCCATTTACAGAGAAACAAGTTATCACACCTACAGGCTCAATTTATACTGGAGTTGATTTTTGTAAGAAATTATGTGGAGTATCCATTATTCGAAGTGGTGAAAGCATGGAAAATGCTTTGCGTGCTTGCTGTAAAGGAATAAAGATAGGAAAAATTCTAATTCACCGTGAAGGTGGTGATGAAACCCAGCTTATTTATGAGAAACTTCCTAAAGATATTTCGGAGAGACATGTTCTTCTCATGGACCCAGTACTTGGAACAGGTAAAACTGCTAGCCAAGCAATCGAGCTTCTTATAAAGAAGGGAGTTCCAGAGTCCCGGATAATATTTCTTAACCTCATTTCTGCTCCTGAGGGAATACATTGTGTATGTAAACATTTTCCGCATCTGAAAATTGTCACATCGGAGATTGAAGAAGGATTAAATGACCAGTTCCGTGTCATACCAGGGTTAGGAGAATTTGGTGATCGCTACTTTGGTACCGACGATTCTTAG
>Glyma.17g129000.1.p sequence-type=predicted peptide transcript=Glyma.17g129000.1 locus=Glyma.17g129000 ID=Glyma.17g129000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDMVIEVLSGAHFSGWHPSTTSSCSSPTSSHHPFVIGVSGGTASGKTTVCDLIIQQLQDHRVVLVSQDSFYRGLTNDELKRVHEYNFDHPNAFDTEQLVETLSKLKSGQSVQVPFYDFKLHQRSSERSRQVNASEVIILEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIRRDTVERGRDVHSVLEQYAKFVKPAFDDFILPSKKYADIIIPRGGDNLVAIDLIVQHIRTKLGQHNLCKIYPNVNVIQSTFQTRGMHTLIRDRDLSKHDFVFYSDRLIRVVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHREGGDETQLIYEKLPKDISERHVLLMDPVLGTGKTASQAIELLIKKGVPESRIIFLNLISAPEGIHCVCKHFPHLKIVTSEIEEGLNDQFRVIPGLGEFGDRYFGTDDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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