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Report for Sequence Feature Glyma.17g128400

Feature Type:gene_model
Chromosome:Gm17
Start:10267423
stop:10270869
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g128400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56110.1AT homolog of nucleolar protein NOP56 JGI N/AIEA
GO:0000154GO-bp rRNA modification EnsemblGenomesN/AIEA
GO:0031428GO-cc box C/D snoRNP complex EnsemblGenomesN/AIEA
GO:0032040GO-cc small-subunit processome EnsemblGenomesN/AIEA
GO:0030515GO-mf snoRNA binding EnsemblGenomesN/AIEA
KOG2573 KOG Ribosome biogenesis protein - Nop56p/Sik1p JGI N/AIEA
PTHR10894Panther NUCLEOLAR PROTEIN 5 (NUCLEOLAR PROTEIN NOP5)(NOP58) JGI N/AIEA
PF01798PFAM Putative snoRNA binding domain JGI N/AIEA
PF08060PFAM NOSIC (NUC001) domain JGI N/AIEA
PF08156PFAM NOP5NT (NUC127) domain JGI N/AIEA

Expression Patterns of Glyma.17g128400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g128400
ParalogEvidenceComments
Glyma.05g046400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g128400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g13770 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g128400
>Glyma.17g128400.1 sequence-type=CDS polypeptide=Glyma.17g128400.1.p locus=Glyma.17g128400 ID=Glyma.17g128400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCTGTTCCTTCTCTACGAATCCGCTTCGGGCTACACCCTGTTCGAGGTTCACGGCCTCGACGAAATCGGCCAGAACACCGAAGCGGTTCGGAACTCCGTTTCGGACCTCAACAGGTTCGGCAAAGTCGTTAAGCTTCGCTCCTTCAACCCTTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGTGAAGGAAGGTAAGAAGTCCAAGTTCAGTTTAGGTGTGTCCGATCCTAAGATTGGTTCGCAGATATCTGAAGTGACTAAGATTCCTTGCCAAAGTAACGAGTTTGTGAGTGAACTTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAGTCTGGAGATTTAGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGAGCAAAGGTGAAGTTTAATGTTAACCGTGTTGACAACATGGTTATTCAAGCTATCTTCCTTCTTGATACACTTGACAAGGATGTTAATTCGTTCTCCATGAGAGTCAGAGAGTGGTATTCATGGCACTTTCCTGAGCTGGTGAAAATTGTAAATGATAATTATCTGTATGCCAAAGTTGCAAAATTTATTGAGGATAAGGCAAAGTTGGCTGAAGACAAGATTCCAGCCTTAACTGACATAGTTGGAGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCCTCCATGGGACAGGATTTGTCCCCAGTGGACTTGATCAACGTCCATCAATTTGCACAGAGGGTAATGGACCTATCTGAGTACAGAAAAAACTTGTATGATTACCTGGTTGCTAAAATGAATGATATTGCACCAAATTTGGCCTCTTTAATTGGTGAAGTTGTTGGTGCTCGTTTGATTTCCCATGCTGGTAGCCTCACAAATTTAGCTAAGTGCCCCTCTTCAACTCTTCAAATTCTTGGTGCAGAGAAGGCTTTGTTCAGGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGTAGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGAAAAGGGTACTACTGTTTTTGGGCAGAAACTCCGTGAGCAAGTTGAGGAACGACTTGACTTTTATGACAAGGGAGTTGCCCCTCGCAAGAACATAGATGTCATGCAGGCTGCTATTGAAAGTGCTGAAAACAAAGATACAGAGATGGAAACAGAAGCACCTGCTGAAGTTTCAGGCAAGAAAACCAAAAAGAAGAAACAAAAAGCTGCTGATGCTGAAGATGACGTGGCTATAGATACAAATGGTGATGCTGTGGAGGATCATAAATCAGAGAGGAAGAAGAAAAAGAAAGAAAAGAGGAAATTGGAACAGGAGATGGAGGTTGACGATCAGGCTGAAGATGATGGTGCCAATGGAGTCACAAGTGAGCAAGAAGGAACAGCTAAAAAGAAGAATAAAAAGGATAGTAATGGAGAAGCATTCGAGGCTGGTGAAGTGTCTAAGAAGAAGAAAAAGAAATCAAAAAAGAAGGACATCGAGTAA
Predicted protein sequences of Glyma.17g128400
>Glyma.17g128400.1.p sequence-type=predicted peptide transcript=Glyma.17g128400.1 locus=Glyma.17g128400 ID=Glyma.17g128400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALFLLYESASGYTLFEVHGLDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDALKQCNAVSEGILTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQSNEFVSELLRGVRFHFDTFVGDLKSGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDKAKLAEDKIPALTDIVGDEDKAKEIVEAAKASMGQDLSPVDLINVHQFAQRVMDLSEYRKNLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSEKGTTVFGQKLREQVEERLDFYDKGVAPRKNIDVMQAAIESAENKDTEMETEAPAEVSGKKTKKKKQKAADAEDDVAIDTNGDAVEDHKSERKKKKKEKRKLEQEMEVDDQAEDDGANGVTSEQEGTAKKKNKKDSNGEAFEAGEVSKKKKKKSKKKDIE*






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