Glyma.17g124500

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Report for Sequence Feature Glyma.17g124500

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9934715
stop:	9937848
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g124500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20360.1	AT	RAB GTPase homolog E1B	JGI	N/A	IEA
GO:0003924	GO-mf	GTPase activity	EnsemblGenomes	N/A	IEA
GO:0003924	GO-mf	GTPase activity	JGI	N/A	IEA
GO:0005525	GO-mf	GTP binding	EnsemblGenomes	N/A	IEA
GO:0005525	GO-mf	GTP binding	JGI	N/A	IEA
KOG0460	KOG	Mitochondrial translation elongation factor Tu	JGI	N/A	IEA
PTHR23115	Panther	TRANSLATION FACTOR	JGI	N/A	IEA
PTHR23115:SF31	Panther		JGI	N/A	IEA
PF00009	PFAM	Elongation factor Tu GTP binding domain	JGI	N/A	IEA
PF03143	PFAM	Elongation factor Tu C-terminal domain	JGI	N/A	IEA
PF03144	PFAM	Elongation factor Tu domain 2	JGI	N/A	IEA

Expression Patterns of Glyma.17g124500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g124500 not represented in the dataset	Glyma.17g124500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g124500

Paralog	Evidence	Comments
Glyma.05g041900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g124500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments

Transcripts of Glyma.17g124500

Limit To All Plant Sequences

>Glyma.17g124500.2 sequence-type=transcript locus=Glyma.17g124500 ID=Glyma.17g124500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATTTCTTCAGCAGCAGCCTCAACCTCAAAACTCTCATACCCTCAACATATCCACCATTCTTCTCCTTCACCCTCCTCCAATTGCCTCTTCCTCAAAACACACACACCCTCCACAACCCACCTCTCCTCTTCCTTCATCCACCCCTCCACAATCCTCCCCCTCCCCCCCGCCGCTGCCACTACCCTCCGCCGCTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTTAACATCGGCACCATCGGCCACGTCGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAACAGCGCCCCCAAAAAATACGACGAGATCGACGCCGCCCCGGAGGAGCGCGCCCGCGGTATCACCATCAACACCGCCACCGTCGAATACGAGACCGAGAACCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAAAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGGCCTATGCCCCAAACCAAAGAACACATTCTCTTGGCCAAACAAGTCGGCGTCCCCAACATTGTCGTCTTCCTCAACAAACAGGACCAGTTCCCCGGCGGACGATGTTCCGATTATCTCCGGTTCCGCTTTGCTTGCTTTGGGAGGCTTTTGATGGCCAACCCTGCCATCAAGCGCGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTTATGGATGCTGTGGATAACTACATTCCCATCCCTCAGCGTCAAACTGAACTTCCCTTTTTGCTGGCCATTGAGGATGTTTCACCATCACCGGTCGCGGAACTGTCGCCACCGGAAGGGTTGAGAGAGGTACCATTAGGGTTGGAGAGACTGTTGATATTGTTGGTGTTAAGGAAACTAGGAACACCACTGTGACTGGGGTGGAAATGTTTCAGAAGATTTTGGATGAGGCTTTGGCTGGGGACAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGACTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACCCCTCACACCAAGTTTTCCGCAATTGTATATGTTTTGAAGAAGGAAGAGGGTGGCAGGCACTCTCCGTTCTTTGCCGGGTACCGGCCTCAGTTCTACATGAGGACTACCGATGTTACTGGCAAGGTAACTGCCATTACGAATGACAGAGATGAGGAGTCCCAGATGGTTATGCCGGGCGACCGCGTTAAGATGGTGGTTGAACTTATTGTGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCCATCATTGAGTAATTAGTTCAGTTGACAAGATATCATGCTcccccccccccccccccccccAACTTATACAAGAAAGGGGAAATGAGGACTCATTTTGTTAACAGAATAAGTACTTGTATTCAATGATACGAGGGGATGGGGGAAGTTGTTGAGAAGTAAATTGGAACGGATAGAACTGGGTCTCTTGAATACCTAGGTGAAGGAGAGGGAGAATTGAGGGgaaaaggtgcaagctgtgatggtggctatggagggtagggctcttggttggtttagaaggtgggaatcttgctcacaattctttcatggaagggtttctaaatagcagtaatgaggcaatttcagccttccatgaatagaaactcgtgcattgctgctgggtttgaagctgactatcacagtggagtatttcagggagtgattcaagttgtatgctgacctgctggggtgcaccgaacTTATTATTTTTTGCATCTTCTGGTGAACTGAAATTCATGTGAATTCTTGATCTGCAGTACAACTTCTGTTCTTTAGCTCATCGTTACTACTGAAGATATTGTTTTTTGCAATAAAGATTAATCACTTTTTTCTC

Coding sequences of Glyma.17g124500

Limit To All Plant Sequences

>Glyma.17g124500.1 sequence-type=CDS polypeptide=Glyma.17g124500.1.p locus=Glyma.17g124500 ID=Glyma.17g124500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATTTCTTCAGCAGCAGCCTCAACCTCAAAACTCTCATACCCTCAACATATCCACCATTCTTCTCCTTCACCCTCCTCCAATTGCCTCTTCCTCAAAACACACACACCCTCCACAACCCACCTCTCCTCTTCCTTCATCCACCCCTCCACAATCCTCCCCCTCCCCCCCGCCGCTGCCACTACCCTCCGCCGCTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTTAACATCGGCACCATCGGCCACGTCGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAACAGCGCCCCCAAAAAATACGACGAGATCGACGCCGCCCCGGAGGAGCGCGCCCGCGGTATCACCATCAACACCGCCACCGTCGAATACGAGACCGAGAACCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAAAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGGCCTATGCCCCAAACCAAAGAACACATTCTCTTGGCCAAACAAGTCGGCGTCCCCAACATTGTCGTCTTCCTCAACAAACAGGACCAGTTCCCCGGCGGACGATGTTCCGATTATCTCCGGTTCCGCTTTGCTTGCTTTGGGAGGCTTTTGATGGCCAACCCTGCCATCAAGCGCGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTTATGGATGCTGTGGATAACTACATTCCCATCCCTCAGCGATGTTTCACCATCACCGGTCGCGGAACTGTCGCCACCGGAAGGGTTGAGAGAGGTACCATTAGGGTTGGAGAGACTGTTGATATTGTTGGTGTTAAGGAAACTAGGAACACCACTGTGACTGGGGTGGAAATGTTTCAGAAGATTTTGGATGAGGCTTTGGCTGGGGACAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGACTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACCCCTCACACCAAGTTTTCCGCAATTGTATATGTTTTGAAGAAGGAAGAGGGTGGCAGGCACTCTCCGTTCTTTGCCGGGTACCGGCCTCAGTTCTACATGAGGACTACCGATGTTACTGGCAAGGTAACTGCCATTACGAATGACAGAGATGAGGAGTCCCAGATGGTTATGCCGGGCGACCGCGTTAAGATGGTGGTTGAACTTATTGTGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCCATCATTGAGTAA

>Glyma.17g124500.2 sequence-type=CDS polypeptide=Glyma.17g124500.2.p locus=Glyma.17g124500 ID=Glyma.17g124500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATTTCTTCAGCAGCAGCCTCAACCTCAAAACTCTCATACCCTCAACATATCCACCATTCTTCTCCTTCACCCTCCTCCAATTGCCTCTTCCTCAAAACACACACACCCTCCACAACCCACCTCTCCTCTTCCTTCATCCACCCCTCCACAATCCTCCCCCTCCCCCCCGCCGCTGCCACTACCCTCCGCCGCTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTTAACATCGGCACCATCGGCCACGTCGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAACAGCGCCCCCAAAAAATACGACGAGATCGACGCCGCCCCGGAGGAGCGCGCCCGCGGTATCACCATCAACACCGCCACCGTCGAATACGAGACCGAGAACCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAAAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGGCCTATGCCCCAAACCAAAGAACACATTCTCTTGGCCAAACAAGTCGGCGTCCCCAACATTGTCGTCTTCCTCAACAAACAGGACCAGTTCCCCGGCGGACGATGTTCCGATTATCTCCGGTTCCGCTTTGCTTGCTTTGGGAGGCTTTTGATGGCCAACCCTGCCATCAAGCGCGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTTATGGATGCTGTGGATAACTACATTCCCATCCCTCAGCGTCAAACTGAACTTCCCTTTTTGCTGGCCATTGAGGATGTTTCACCATCACCGGTCGCGGAACTGTCGCCACCGGAAGGGTTGAGAGAGGTACCATTAGGGTTGGAGAGACTGTTGATATTGTTGGTGTTAAGGAAACTAGGAACACCACTGTGA

Predicted protein sequences of Glyma.17g124500

Limit To All Plant Sequences

>Glyma.17g124500.1.p sequence-type=predicted peptide transcript=Glyma.17g124500.1 locus=Glyma.17g124500 ID=Glyma.17g124500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAISSAAASTSKLSYPQHIHHSSPSPSSNCLFLKTHTPSTTHLSSSFIHPSTILPLPPAAATTLRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQFPGGRCSDYLRFRFACFGRLLMANPAIKRGENQWVDKIYELMDAVDNYIPIPQRCFTITGRGTVATGRVERGTIRVGETVDIVGVKETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAITNDRDEESQMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE*

>Glyma.17g124500.2.p sequence-type=predicted peptide transcript=Glyma.17g124500.2 locus=Glyma.17g124500 ID=Glyma.17g124500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAISSAAASTSKLSYPQHIHHSSPSPSSNCLFLKTHTPSTTHLSSSFIHPSTILPLPPAAATTLRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQFPGGRCSDYLRFRFACFGRLLMANPAIKRGENQWVDKIYELMDAVDNYIPIPQRQTELPFLLAIEDVSPSPVAELSPPEGLREVPLGLERLLILLVLRKLGTPL*

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