Glyma.17g122500

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Report for Sequence Feature Glyma.17g122500

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9801722
stop:	9804711
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g122500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74070.1	AT	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein	JGI	N/A	IEA
GO:0000413	GO-bp	protein peptidyl-prolyl isomerization	EnsemblGenomes	N/A	IEA
GO:0006457	GO-bp	protein folding	JGI	N/A	IEA
GO:0003755	GO-mf	peptidyl-prolyl cis-trans isomerase activity	EnsemblGenomes	N/A	IEA
GO:0003755	GO-mf	peptidyl-prolyl cis-trans isomerase activity	JGI	N/A	IEA
GO:0016853	GO-mf	isomerase activity	EnsemblGenomes	N/A	IEA
KOG0880	KOG	Peptidyl-prolyl cis-trans isomerase	JGI	N/A	IEA
PTHR11071	Panther	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	JGI	N/A	IEA
PTHR11071:SF132	Panther		JGI	N/A	IEA
PF00160	PFAM	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	JGI	N/A	IEA

Proteins Associated with Glyma.17g122500

Locus	Gene Symbol	Protein Name
	CYP58	peptidyl-prolyl cis-trans isomerase CYP58

Expression Patterns of Glyma.17g122500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g122500

Paralog	Evidence	Comments
Glyma.05g014300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g122500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g13180	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g122500

Limit To All Plant Sequences

>Glyma.17g122500.2 sequence-type=transcript locus=Glyma.17g122500 ID=Glyma.17g122500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGTTAGAATCCAAAACCAGCTTTGTCTCAACAAGTTCAATGTTGCAGATCAATGTTTTTTATTTTTTTGAAAAAGCTAAACTGAAATTCATTAAAAATCAAACTAAACATAAAACATGTTTAGCATGATAGAAAATAGATACAATTTATGAAAAAGCTCTAGTGCACATTTTTTCAAACACCTGCAAGGGATACCAACACATCCTGAACAGAAGAACTATAGCAAAATCTCTTGAAATCAATAATCGCCAATCCCAAACCAACTAGGAGAACCACACAGATTGCAATCAAGAATTGTCATcaaaagcagaaacagaacgcttgaaccagaactagagtcgcaacatccagaaacagaaccaATGCCAAAGAAGTAGAAAGATAGCACGTTTTTAAAATCCAAACTCCAATGCCTGATCAATCACGAAGGTCGGAAATCGTATTCACGAAGGCGGGCGGCGACAATGAATCAGGAACCCAATCGGTGGGTTGTGATGCGGAAGATGCAGCGAAGCTTTCTAAATCAGTGTCCCCACAGCGGTAGATCTGGATCTGGGTCGAGCGCGCCGGTCTGCAGTTGTGGTATTGTGGTTGAGATTTGGGAGTTCACTGGATCCCGGTGGATGGCAGCGGTGTTGGTGGCACTGACGGCATGGAGGCAGAGAGGAGCGTCGCGGACTCCGCTCAATCTTCAATGTGAGCACAACTAGCACATCCAGAGATTGGAGAGAGATAGGGTTAGGGACACGTGTCAGCATTCAATTGTTCAACAACGTAGAAATGCTACAAAACCCAAGAGTAGTGCGATATTCCGCTCAGCCATTCAATCCTCCAACTCGCATGGCAACACCATCACTTTCTCCATTCCAATTAATACCCACTTCTCCATCTTTTCCAATCCTCAAACAACAATGCAGATTCTCACGTAGAGAGCTCACCATCTTCAGCAACTCTTGCTTGCTACTACTCTTGGGTGCTCAGGCAAGAGCAGAAGAGAATTTGACTTTGGCAGAAGAAGATGTTGGTAACACAAGTAACAGCGATCAACCAGAAGAGAATCTGACTTTAGCAGAAGAAGATGTTGCTAACACAAGTAACAGTGATAAGCCAGAAGAGAATGTGGCTGTCACTCCCAGCTGCACTGAAAGAAAACCTACAAAACAAGTATTCTTAGACATATCTATTGATGGCGAACCTGTTGGTCGCGTTACTATAGGGCTCTATGGAGATGATGTCCCTGCAGGAGTTGATAGGTTTAGTAAGATTGCAAGTGGAGCTGCTGGTATTAGCTACAGAAGAAAGGAGTTTGTCAAAATAATGCCCAATTACGTTCAACATGGTGGCCTGAGATCGTATGGGGTGGATGCTGAACTTGCTTCGAAGACAGGTAGCAACTTGGGAACTAGTAGACTTGGTGAGGAATGGGAAAGGGAGTATGAGAGATGTCCTGGGACTAAAAATGTGGCCGGAAGTGTAGGCATTATTGTGAGAAACCCATCAAAACCGCCTCCAAAGTTGAAGCTTATTGCAAAACAAGGGAAGCTGGAGATTGATGAAGAAGAAGTAGGAAATGATCCCAATGGGACAGAATTTGTCATAGCTACGAAGGATTCGCCAGAATTGGATGCATCGACTCTGGTAATTGGAAGAGTAATAGGAGGGATGGAGGTTGTGCAGAGGATCGGTCTAGTTAAAACCGTACAAGAGAATACAGGATCTCCATATTTTAGGGTGGCAAAGCTAATAGGAGACAAGAGAGCTGTTGTAGCAGAAAGAGGATTCAACCGCCCTTATTCAAAGGTCATTGTTACAAATTGTGGTTTAATGGAGTAACACAAAATTGTATTCACTCCCTTCTCTAGTTGATTTCCAGTGTATGTGTTAGAGAACATATATCACACTCATAACAATCTCCATTGTCATTCAACCCTATGTAACGTCTGCCATTTGTATTTCAAATGAGGAAAAAAAAATATTACAGCTCGGTTCCAAATGGCAAAGTAATCGTCAGTCAATCACAGGTATCAAGGTGCAACAAATTACTTGCTTTTGTTAGGAGCAGGATTGAACCCAATATATCTTCAGTAAAAAAAACAATTAAAACTTTGATACAACAATTACAAGGCTTTTAAATTGAATAACATGCCGTGAACAAAGACAGTATACACAACATCTAGCTGGAGGAGGGGGGAATTGTTTTTGAATTAGGACCCCTCATATCCCCTGGGTCCAAGTGGTTATGAATTATGGCCTGTAATATGAGTGGACTCTGTTCTTTTTGATGGTGGAGACATGAAAAGCTTTCTAATT

>Glyma.17g122500.3 sequence-type=transcript locus=Glyma.17g122500 ID=Glyma.17g122500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAATTTTGAGTACCTTTTTGGCATATTTCTTTCTCAATATCTGAAGGGGCCCACGTAAGTTAGTGTACCTAAAATTATGACATGAAACAAATAAATGGCTGCCACACACACATAGCCTATTTCCATCTTTCTTATCCATGAAATCTCCTCAGTATCCGTTACTCTATCTATCTATTGTTCTTCCTTATTTCGTTTTCTTTTCTAAATCCCATGATCTCGCTATATATGAAACAGAACAGCCGATACAGACACTAACATAAACCTATTGCCAAGTTTAGTTCAACAACGTAGAAATGCTACAAAACCCAAGAGTAGTGCGATATTCCGCTCAGCCATTCAATCCTCCAACTCGCATGGCAACACCATCACTTTCTCCATTCCAATTAATACCCACTTCTCCATCTTTTCCAATCCTCAAACAACAATGCAGATTCTCACGTAGAGAGCTCACCATCTTCAGCAACTCTTGCTTGCTACTACTCTTGGGTGCTCAGGCAAGAGCAGAAGAGAATTTGACTTTGGCAGAAGAAGATGTTGGTAACACAAGTAACAGCGATCAACCAGAAGAGAATCTGACTTTAGCAGAAGAAGATGTTGCTAACACAAGTAACAGTGATAAGCCAGAAGAGAATGTGGCTGTCACTCCCAGCTGCACTGAAAGAAAACCTACAAAACAAGTATTCTTAGACATATCTATTGATGGCGAACCTGTTGGTCGCGTTACTATAGGGCTCTATGGAGATGATGTCCCTGCAGGAGTTGATAGGTTTAGTAAGATTGCAAGTGGAGCTGCTGGTATTAGCTACAGAAGAAAGGAGTTTGTCAAAATAATGCCCAATTACGTTCAACATGGTGGCCTGAGATCGTATGGGGTGGATGCTGAACTTGCTTCGAAGACAGGTAGCAACTTGGGAACTAGTAGACTTGGTGAGGAATGGGAAAGGGAGTATGAGAGATGTCCTGGGACTAAAAATGTGGCCGGAAGTGTAGGCATTATTGTGAGAAACCCATCAAAACCGCCTCCAAAGTTGAAGCTTATTGCAAAACAAGGGAAGCTGGAGATTGATGAAGAAGAAGTAGGAAATGATCCCAATGGGACAGAATTTGTCATAGCTACGAAGGATTCGCCAGAATTGGATGCATCGACTCTGGTAATTGGAAGAGTAATAGGAGGGATGGAGGTTGTGCAGAGGATCGGTCTAGTTAAAACCGTACAAGAGAATACAGGATCTCCATATTTTAGGGTGGCAAAGCTAATAGGAGACAAGAGAGCTGTTGTAGCAGAAAGAGGATTCAACCGCCCTTATTCAAAGGTCATTGTTACAAATTGTGGTTTAATGGAGTAACACAAAATTGTATTCACTCCCTTCTCTAGTTGATTTCCAGTGTATGTGTTAGAGAACATATATCACACTCATAACAATCTCCATTGTCATTCAACCCTATGTAACGTCTGCCATTTGTATTTCAAATGAGGAAAAAAAAATATTACAGCTCGGTTCCAAATGGCAAAGTAATCGTCAGTCAATCACAGGTATCAAGGTGCAACAAATTACTTGCTTTTGTTAGGAGCAGGATTGAACCCAATATATCTTCAGTAAAAAAAACAATTAAAACTTTGATACAACAATTACAAGGCTTTTAAATTGAATAACATGCCGTGAACAAAGACAGTATACACAACATCTAGCTGGAGGAGGGGGGAATTGTTTTTGAATTAGGACCCCTCATATCCCCTGGGTCCAAGTGGTTATGAATTATGGCCTGTAATATGAGTGGACTCTGTTCTTTTTGATGGTGGAGACATGAAAAGCTTTCTAATTGAACCTACAGGATCATCCACC

Coding sequences of Glyma.17g122500

Limit To All Plant Sequences

>Glyma.17g122500.1 sequence-type=CDS polypeptide=Glyma.17g122500.1.p locus=Glyma.17g122500 ID=Glyma.17g122500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTACAAAACCCAAGAGTAGTGCGATATTCCGCTCAGCCATTCAATCCTCCAACTCGCATGGCAACACCATCACTTTCTCCATTCCAATTAATACCCACTTCTCCATCTTTTCCAATCCTCAAACAACAATGCAGATTCTCACGTAGAGAGCTCACCATCTTCAGCAACTCTTGCTTGCTACTACTCTTGGGTGCTCAGGCAAGAGCAGAAGAGAATTTGACTTTGGCAGAAGAAGATGTTGGTAACACAAGTAACAGCGATCAACCAGAAGAGAATCTGACTTTAGCAGAAGAAGATGTTGCTAACACAAGTAACAGTGATAAGCCAGAAGAGAATGTGGCTGTCACTCCCAGCTGCACTGAAAGAAAACCTACAAAACAAGTATTCTTAGACATATCTATTGATGGCGAACCTGTTGGTCGCGTTACTATAGGGCTCTATGGAGATGATGTCCCTGCAGGAGTTGATAGGTTTAGTAAGATTGCAAGTGGAGCTGCTGGTATTAGCTACAGAAGAAAGGAGTTTGTCAAAATAATGCCCAATTACGTTCAACATGGTGGCCTGAGATCGTATGGGGTGGATGCTGAACTTGCTTCGAAGACAGGTAGCAACTTGGGAACTAGTAGACTTGGTGAGGAATGGGAAAGGGAGTATGAGAGATGTCCTGGGACTAAAAATGTGGCCGGAAGTGTAGGCATTATTGTGAGAAACCCATCAAAACCGCCTCCAAAGTTGAAGCTTATTGCAAAACAAGGGAAGCTGGAGATTGATGAAGAAGAAGTAGGAAATGATCCCAATGGGACAGAATTTGTCATAGCTACGAAGGATTCGCCAGAATTGGATGCATCGACTCTGGTAATTGGAAGAGTAATAGGAGGGATGGAGGTTGTGCAGAGGATCGGTCTAGTTAAAACCGTACAAGAGAATACAGGATCTCCATATTTTAGGGTGGCAAAGCTAATAGGAGACAAGAGAGCTGTTGTAGCAGAAAGAGGATTCAACCGCCCTTATTCAAAGGTCATTGTTACAAATTGTGGTTTAATGGAGTAA

>Glyma.17g122500.2 sequence-type=CDS polypeptide=Glyma.17g122500.2.p locus=Glyma.17g122500 ID=Glyma.17g122500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTACAAAACCCAAGAGTAGTGCGATATTCCGCTCAGCCATTCAATCCTCCAACTCGCATGGCAACACCATCACTTTCTCCATTCCAATTAATACCCACTTCTCCATCTTTTCCAATCCTCAAACAACAATGCAGATTCTCACGTAGAGAGCTCACCATCTTCAGCAACTCTTGCTTGCTACTACTCTTGGGTGCTCAGGCAAGAGCAGAAGAGAATTTGACTTTGGCAGAAGAAGATGTTGGTAACACAAGTAACAGCGATCAACCAGAAGAGAATCTGACTTTAGCAGAAGAAGATGTTGCTAACACAAGTAACAGTGATAAGCCAGAAGAGAATGTGGCTGTCACTCCCAGCTGCACTGAAAGAAAACCTACAAAACAAGTATTCTTAGACATATCTATTGATGGCGAACCTGTTGGTCGCGTTACTATAGGGCTCTATGGAGATGATGTCCCTGCAGGAGTTGATAGGTTTAGTAAGATTGCAAGTGGAGCTGCTGGTATTAGCTACAGAAGAAAGGAGTTTGTCAAAATAATGCCCAATTACGTTCAACATGGTGGCCTGAGATCGTATGGGGTGGATGCTGAACTTGCTTCGAAGACAGGTAGCAACTTGGGAACTAGTAGACTTGGTGAGGAATGGGAAAGGGAGTATGAGAGATGTCCTGGGACTAAAAATGTGGCCGGAAGTGTAGGCATTATTGTGAGAAACCCATCAAAACCGCCTCCAAAGTTGAAGCTTATTGCAAAACAAGGGAAGCTGGAGATTGATGAAGAAGAAGTAGGAAATGATCCCAATGGGACAGAATTTGTCATAGCTACGAAGGATTCGCCAGAATTGGATGCATCGACTCTGGTAATTGGAAGAGTAATAGGAGGGATGGAGGTTGTGCAGAGGATCGGTCTAGTTAAAACCGTACAAGAGAATACAGGATCTCCATATTTTAGGGTGGCAAAGCTAATAGGAGACAAGAGAGCTGTTGTAGCAGAAAGAGGATTCAACCGCCCTTATTCAAAGGTCATTGTTACAAATTGTGGTTTAATGGAGTAA

>Glyma.17g122500.3 sequence-type=CDS polypeptide=Glyma.17g122500.3.p locus=Glyma.17g122500 ID=Glyma.17g122500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTACAAAACCCAAGAGTAGTGCGATATTCCGCTCAGCCATTCAATCCTCCAACTCGCATGGCAACACCATCACTTTCTCCATTCCAATTAATACCCACTTCTCCATCTTTTCCAATCCTCAAACAACAATGCAGATTCTCACGTAGAGAGCTCACCATCTTCAGCAACTCTTGCTTGCTACTACTCTTGGGTGCTCAGGCAAGAGCAGAAGAGAATTTGACTTTGGCAGAAGAAGATGTTGGTAACACAAGTAACAGCGATCAACCAGAAGAGAATCTGACTTTAGCAGAAGAAGATGTTGCTAACACAAGTAACAGTGATAAGCCAGAAGAGAATGTGGCTGTCACTCCCAGCTGCACTGAAAGAAAACCTACAAAACAAGTATTCTTAGACATATCTATTGATGGCGAACCTGTTGGTCGCGTTACTATAGGGCTCTATGGAGATGATGTCCCTGCAGGAGTTGATAGGTTTAGTAAGATTGCAAGTGGAGCTGCTGGTATTAGCTACAGAAGAAAGGAGTTTGTCAAAATAATGCCCAATTACGTTCAACATGGTGGCCTGAGATCGTATGGGGTGGATGCTGAACTTGCTTCGAAGACAGGTAGCAACTTGGGAACTAGTAGACTTGGTGAGGAATGGGAAAGGGAGTATGAGAGATGTCCTGGGACTAAAAATGTGGCCGGAAGTGTAGGCATTATTGTGAGAAACCCATCAAAACCGCCTCCAAAGTTGAAGCTTATTGCAAAACAAGGGAAGCTGGAGATTGATGAAGAAGAAGTAGGAAATGATCCCAATGGGACAGAATTTGTCATAGCTACGAAGGATTCGCCAGAATTGGATGCATCGACTCTGGTAATTGGAAGAGTAATAGGAGGGATGGAGGTTGTGCAGAGGATCGGTCTAGTTAAAACCGTACAAGAGAATACAGGATCTCCATATTTTAGGGTGGCAAAGCTAATAGGAGACAAGAGAGCTGTTGTAGCAGAAAGAGGATTCAACCGCCCTTATTCAAAGGTCATTGTTACAAATTGTGGTTTAATGGAGTAA

Predicted protein sequences of Glyma.17g122500

Limit To All Plant Sequences

>Glyma.17g122500.1.p sequence-type=predicted peptide transcript=Glyma.17g122500.1 locus=Glyma.17g122500 ID=Glyma.17g122500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLQNPRVVRYSAQPFNPPTRMATPSLSPFQLIPTSPSFPILKQQCRFSRRELTIFSNSCLLLLLGAQARAEENLTLAEEDVGNTSNSDQPEENLTLAEEDVANTSNSDKPEENVAVTPSCTERKPTKQVFLDISIDGEPVGRVTIGLYGDDVPAGVDRFSKIASGAAGISYRRKEFVKIMPNYVQHGGLRSYGVDAELASKTGSNLGTSRLGEEWEREYERCPGTKNVAGSVGIIVRNPSKPPPKLKLIAKQGKLEIDEEEVGNDPNGTEFVIATKDSPELDASTLVIGRVIGGMEVVQRIGLVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVIVTNCGLME*

>Glyma.17g122500.2.p sequence-type=predicted peptide transcript=Glyma.17g122500.2 locus=Glyma.17g122500 ID=Glyma.17g122500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLQNPRVVRYSAQPFNPPTRMATPSLSPFQLIPTSPSFPILKQQCRFSRRELTIFSNSCLLLLLGAQARAEENLTLAEEDVGNTSNSDQPEENLTLAEEDVANTSNSDKPEENVAVTPSCTERKPTKQVFLDISIDGEPVGRVTIGLYGDDVPAGVDRFSKIASGAAGISYRRKEFVKIMPNYVQHGGLRSYGVDAELASKTGSNLGTSRLGEEWEREYERCPGTKNVAGSVGIIVRNPSKPPPKLKLIAKQGKLEIDEEEVGNDPNGTEFVIATKDSPELDASTLVIGRVIGGMEVVQRIGLVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVIVTNCGLME*

>Glyma.17g122500.3.p sequence-type=predicted peptide transcript=Glyma.17g122500.3 locus=Glyma.17g122500 ID=Glyma.17g122500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLQNPRVVRYSAQPFNPPTRMATPSLSPFQLIPTSPSFPILKQQCRFSRRELTIFSNSCLLLLLGAQARAEENLTLAEEDVGNTSNSDQPEENLTLAEEDVANTSNSDKPEENVAVTPSCTERKPTKQVFLDISIDGEPVGRVTIGLYGDDVPAGVDRFSKIASGAAGISYRRKEFVKIMPNYVQHGGLRSYGVDAELASKTGSNLGTSRLGEEWEREYERCPGTKNVAGSVGIIVRNPSKPPPKLKLIAKQGKLEIDEEEVGNDPNGTEFVIATKDSPELDASTLVIGRVIGGMEVVQRIGLVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVIVTNCGLME*

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