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Report for Sequence Feature Glyma.17g122100

Feature Type:gene_model
Chromosome:Gm17
Start:9774397
stop:9778768
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g122100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G38640.1AT NagB/RpiA/CoA transferase-like superfamily protein JGI N/AIEA
GO:0044237GO-bp cellular metabolic process EnsemblGenomesN/AIEA
GO:0044237GO-bp cellular metabolic process JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
KOG1467 KOG Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) JGI N/AIEA
PTHR10233Panther TRANSLATION INITIATION FACTOR EIF-2B JGI N/AIEA
PTHR10233:SF14Panther TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT DELTA JGI N/AIEA
PF01008PFAM Initiation factor 2 subunit family JGI N/AIEA

Expression Patterns of Glyma.17g122100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g122100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g13130 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g122100
>Glyma.17g122100.1 sequence-type=CDS polypeptide=Glyma.17g122100.1.p locus=Glyma.17g122100 ID=Glyma.17g122100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGCACCACGTGTCTCTCGAGCAATCGGCGACCCCAAAATCCGCCGCGTTGGTTTCTTCGCTTCAGATTCTTCCGCCACCGATTCTCTCATGATCCCGTCGCCACGTCATCGCTCCATTCCGGTTCCGCCGACGCACCCTTCCGGAGATCGCCACGTGGCATCCGGGAGCTACGATCCCACGGAATACCCAAAACTCGCTACTGGCATTGAAAAGAGAGGGGAGGAAGAGGAAGAGAAAGAGGTTCTGCAATCAAGCTTAAAGCCGTTGAAAGCAAAAACTACCAAGGCTGAGAGACGGGCCTTGCAGGAGGCACAGAGAGCTGCTAAAGCTGCTTCTAAAGACGAGGGAAGTAAAGCAGTTGCTGAATCTGGTCGAGGCACCCCAGGTAAAAGTACAAAGCAGTCTTCACAAAAGAAAGGTGGTCCTTCCTGTGTGTCTCCAGTGGCCACTGATAAGAATGCAGGAAATCGTCCTCTGGATAAAGATAGGAAAATGGATGCTCCTTCTCCGCGAATGCAATTTGATGACAAAAGCCGATTGGAAAAGGCTAGAAGATGTGCAGTAGTCAATCCAACTGAATCTAGAAACAAAGTTGAATTATTTCAGCATTTGCCTCAGTATGAATACGGAACTCAGCTTCCTAATCTTGAATCAAAGTTTTTCCAAATTGGTTCAGTGCATCCTGCTGTATTTGAGGTTGGACTGCGTTATTCAGCAGGAGATATATCAGGGGGTAATGCTCGTTGTATTGCAATGCTAAGAGCATTTCAAGATGCCATTAGAGATTACTGCACACCACATGAAAAGGTCCTTGTTAGGGATTTAGCTTCAAAAATCAGTAGTTATGTATCTTTCTTTACTGAATGTAGACCACTTTCTATGAGCATGGGAAATGCAATTAGGTTTGTAAAGAGTCGTATTGTCAATCTGACTTTAAATCATTCGGAGTTTGAGGCAAAAACAACCCTGTGTTCTGATATTGACCGGTTCATAAATGAAAAAATAATTCTTGCTGATAAGGTGATTGTCCGACATGCTTTTACAAAGGTTAAGGATGGGGATGTTCTTCTCACATATGGATTGTCATGTGTTGTTGAGATGATTCTTTTATATGCCTATGAGCAAGGTAAAAAGTTCCGTGTGGTGGTGGTAGATTCACGACCTAGGCTTGAAGGTCAGGCCTTACTTCGTAGGCTAGTGGCTAAGGGCCTGAGTTGCACATATACTCATATAAATGCTGTTTCTTATATCATGCATGAGGTCACACGGGTTCTTCTGGGAGCTTCTGCAGTTTTGTCTAATGGAACTGTATATTCAAGGGTTGGGACTTCTTGTGTTGCAATGGTCGCTCATGCCTTTCATGTTCCTGTATTGATCTGTTGTGAAGCATATAAATTTCATGAAAGGGTGCAACTGGATTCAATATGTTCTAATGAACTAGGTGACCCAGATGCTATTGCCAGGGTTCCTGGACGAATGGATGTCAGTTATCTTAGCAATTGGGCCAGTGAAGATAATTTGAGGCTTTTGAATTTGATGTATGATGCTACTCCTTCAGATTATGTCTCGGTTATTGTGACAGATTATGGCATGCTCCCTCCTACAAGCGTGCCTGTAATAGTACGTGAATATGGACGAGAGCATTTGTTGATGTAG
Predicted protein sequences of Glyma.17g122100
>Glyma.17g122100.1.p sequence-type=predicted peptide transcript=Glyma.17g122100.1 locus=Glyma.17g122100 ID=Glyma.17g122100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAPRVSRAIGDPKIRRVGFFASDSSATDSLMIPSPRHRSIPVPPTHPSGDRHVASGSYDPTEYPKLATGIEKRGEEEEEKEVLQSSLKPLKAKTTKAERRALQEAQRAAKAASKDEGSKAVAESGRGTPGKSTKQSSQKKGGPSCVSPVATDKNAGNRPLDKDRKMDAPSPRMQFDDKSRLEKARRCAVVNPTESRNKVELFQHLPQYEYGTQLPNLESKFFQIGSVHPAVFEVGLRYSAGDISGGNARCIAMLRAFQDAIRDYCTPHEKVLVRDLASKISSYVSFFTECRPLSMSMGNAIRFVKSRIVNLTLNHSEFEAKTTLCSDIDRFINEKIILADKVIVRHAFTKVKDGDVLLTYGLSCVVEMILLYAYEQGKKFRVVVVDSRPRLEGQALLRRLVAKGLSCTYTHINAVSYIMHEVTRVLLGASAVLSNGTVYSRVGTSCVAMVAHAFHVPVLICCEAYKFHERVQLDSICSNELGDPDAIARVPGRMDVSYLSNWASEDNLRLLNLMYDATPSDYVSVIVTDYGMLPPTSVPVIVREYGREHLLM*






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