Glyma.17g121500

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Report for Sequence Feature Glyma.17g121500

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9698161
stop:	9700535
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g121500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18550.2	AT	TCP family transcription factor	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
PF03634	PFAM	TCP family transcription factor	JGI	N/A	IEA

Proteins Associated with Glyma.17g121500

Locus	Gene Symbol	Protein Name
	TCP52	Teosinte branched1 and cycloidea and proliferating cell factor family protein gene 52

Expression Patterns of Glyma.17g121500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g121500 not represented in the dataset	Glyma.17g121500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g121500

Paralog	Evidence	Comments
Glyma.05g013300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g121500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g13065	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g121500

Limit To All Plant Sequences

>Glyma.17g121500.2 sequence-type=transcript locus=Glyma.17g121500 ID=Glyma.17g121500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTTGCTCAAAAGAAACGATTAGGAAAAAGGATGCCCCTTGTCTACAATAAATTGCTCTTGTTGGGTCCTTTGTCTCTCACATTATCTTTAGTactcactcactcactactctccctctccttcactTCAGCAGTTCACCCTCTCATAATTCAACCCTCATGCTTATAAGGGAACAGGCAAAACAAAAATGAACGGATGGAAAAGGATAGAATTAATAGCTACTCTTTCTTTTTCAATAGGGAGATAGATAGAGCTAGCAAACATGTCGTTCTCAGGCATTGAAAGTCCCAACCAATAACCAGTGTTTTTCCATATTCTTCAAGGGTAGGGTTATTTTTTTTTGGTGCAGTCGTAGTCCCAACAAGCTTAATATTAATTCTTTCCAGATATGTATTCCTCAAATACCTTCCTCAACGGCAATGACCTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTTATAATTTTTCAAAAGAAGAAGCCAATTCCAATTACGCCCTtcctcctcctccacctcctcctcctTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCTAGAACACCACCACCATGACTTGCTCCTACTTCATCAGTACTCTCTGACTGACTCTGGAGTATCAAAAAACCTTGAAGTTGTGGCCGAAATCTCGCCAATTCCTTGCCCTGAACAAGGTGGAATTGCGATGGAGCACACTCCAAGAAAGAGATCCAGCAAGAGAGACCGCCACAGCAAGATCAACACCGCGAGAGGCCTCAGGGATCGAAGAATGAGGCTGTCCCTCGAAGTCGCGAAGCGGTTTTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGAGTGGTTACTGAACCAAGCAAAGGGTGAAATCAAACAACTTGCAAGGGAAAAAACAAGTGTTGTTGGTGGTGGTGGCAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGCAGTGAGTACTGGAGGAGTTAATAACGAGGAGCAAGAGAGGGAGACAGTACCAAACATGATGAAGAGAAGAAAAAGTAAGGTTTGTAGAAAGAGTGCATTCAATGCTATTGATAAGGAATCgagggaaaaggcaagagaaagggcaagggaaagaacaagagagaagatgagaaCTCGGAGAGTACTTGTTTCTGATGCATCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTACACATCATCCCTCCTTGGATGTGCACCTTCATGAGGCTGATCAAGAACCAATTAGTTCTCACAACGTGAAGGAGCATAATTTGGGAGAGGACATGGCGCATGAAGATAATTCTTTGGCGCTCATGAACAAGTGGAGCCCAACTATGTTGTTCAATTCTCTTCACAACTCAGGAATCCTTCAGGAACATCAATTCGCAGAATTTCAGTCCTTGGGGAAACAATGGGAAGCCTACAGCAATCAAATCTGATATTTGTGCTCATCATCGATTGCACCCATCATGTTTTTGTGTCAGCAGAATAAAAATACAATTAATCATGCTGTGTATTTCTTTACTTTCCTTTTGGCATGTAATGTGGTAAGGTATCTTCCGTTTACCAGCATATGGGAAACAATATTTCGTGAATGCTTTGTATGTCATCTCCATATATAAAATTTTACTTC

Coding sequences of Glyma.17g121500

Limit To All Plant Sequences

>Glyma.17g121500.1 sequence-type=CDS polypeptide=Glyma.17g121500.1.p locus=Glyma.17g121500 ID=Glyma.17g121500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTCCTCAAATACCTTCCTCAACGGCAATGACCTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTTATAATTTTTCAAAAGAAGAAGCCAATTCCAATTACGCCCTTCCTCCTCCTCCACCTCCTCCTCCTTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCTAGAACACCACCACCATGACTTGCTCCTACTTCATCAGTACTCTCTGACTGACTCTGGAGTATCAAAAAACCTTGAAGTTGTGGCCGAAATCTCGCCAATTCCTTGCCCTGAACAAGGTGGAATTGCGATGGAGCACACTCCAAGAAAGAGATCCAGCAAGAGAGACCGCCACAGCAAGATCAACACCGCGAGAGGCCTCAGGGATCGAAGAATGAGGCTGTCCCTCGAAGTCGCGAAGCGGTTTTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGAGTGGTTACTGAACCAAGCAAAGGGTGAAATCAAACAACTTGCAAGGGAAAAAACAAGTGTTGTTGGTGGTGGTGGCAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGCAGTGAGTACTGGAGGAGTTAATAACGAGGAGCAAGAGAGGGAGACAGTACCAAACATGATGAAGAGAAGAAAAAGTAAGGTTTGTAGAAAGAGTGCATTCAATGCTATTGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCAAGGGAAAGAACAAGAGAGAAGATGAGAACTCGGAGAGTACTTGTTTCTGATGCATCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTACACATCATCCCTCCTTGGATGTGCACCTTCATGAGGCTGATCAAGAACCAATTAGTTCTCACAACGTGAAGGAGCATAATTTGGGAGAGGACATGGCGCATGAAGATAATTCTTTGGCGCTCATGAACAAGTGGAGCCCAACTATGTTGTTCAATTCTCTTCACAACTCAGGAATCCTTCAGGAACATCAATTCGCAGAATTTCAGTCCTTGGGGAAACAATGGGAAGCCTACAGCAATCAAATCTGA

>Glyma.17g121500.2 sequence-type=CDS polypeptide=Glyma.17g121500.2.p locus=Glyma.17g121500 ID=Glyma.17g121500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTCCTCAAATACCTTCCTCAACGGCAATGACCTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTTATAATTTTTCAAAAGAAGAAGCCAATTCCAATTACGCCCTTCCTCCTCCTCCACCTCCTCCTCCTTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCTAGAACACCACCACCATGACTTGCTCCTACTTCATCAGTACTCTCTGACTGACTCTGGAGTATCAAAAAACCTTGAAGTTGTGGCCGAAATCTCGCCAATTCCTTGCCCTGAACAAGGTGGAATTGCGATGGAGCACACTCCAAGAAAGAGATCCAGCAAGAGAGACCGCCACAGCAAGATCAACACCGCGAGAGGCCTCAGGGATCGAAGAATGAGGCTGTCCCTCGAAGTCGCGAAGCGGTTTTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGAGTGGTTACTGAACCAAGCAAAGGGTGAAATCAAACAACTTGCAAGGGAAAAAACAAGTGTTGTTGGTGGTGGTGGCAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGCAGTGAGTACTGGAGGAGTTAATAACGAGGAGCAAGAGAGGGAGACAGTACCAAACATGATGAAGAGAAGAAAAAGTAAGGTTTGTAGAAAGAGTGCATTCAATGCTATTGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCAAGGGAAAGAACAAGAGAGAAGATGAGAACTCGGAGAGTACTTGTTTCTGATGCATCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTACACATCATCCCTCCTTGGATGTGCACCTTCATGAGGCTGATCAAGAACCAATTAGTTCTCACAACGTGAAGGAGCATAATTTGGGAGAGGACATGGCGCATGAAGATAATTCTTTGGCGCTCATGAACAAGTGGAGCCCAACTATGTTGTTCAATTCTCTTCACAACTCAGGAATCCTTCAGGAACATCAATTCGCAGAATTTCAGTCCTTGGGGAAACAATGGGAAGCCTACAGCAATCAAATCTGA

Predicted protein sequences of Glyma.17g121500

Limit To All Plant Sequences

>Glyma.17g121500.1.p sequence-type=predicted peptide transcript=Glyma.17g121500.1 locus=Glyma.17g121500 ID=Glyma.17g121500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYSSNTFLNGNDLISYPNQPFCFRPFSFESNPTYNFSKEEANSNYALPPPPPPPPLSFFQSPFDENIFLEHHHHDLLLLHQYSLTDSGVSKNLEVVAEISPIPCPEQGGIAMEHTPRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKGEIKQLAREKTSVVGGGGKSASSTSECEGVSSLDEVAVSTGGVNNEEQERETVPNMMKRRKSKVCRKSAFNAIDKESREKARERARERTREKMRTRRVLVSDASNLNRLSSWNPFETVEDSAGTTHHPSLDVHLHEADQEPISSHNVKEHNLGEDMAHEDNSLALMNKWSPTMLFNSLHNSGILQEHQFAEFQSLGKQWEAYSNQI*

>Glyma.17g121500.2.p sequence-type=predicted peptide transcript=Glyma.17g121500.2 locus=Glyma.17g121500 ID=Glyma.17g121500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYSSNTFLNGNDLISYPNQPFCFRPFSFESNPTYNFSKEEANSNYALPPPPPPPPLSFFQSPFDENIFLEHHHHDLLLLHQYSLTDSGVSKNLEVVAEISPIPCPEQGGIAMEHTPRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKGEIKQLAREKTSVVGGGGKSASSTSECEGVSSLDEVAVSTGGVNNEEQERETVPNMMKRRKSKVCRKSAFNAIDKESREKARERARERTREKMRTRRVLVSDASNLNRLSSWNPFETVEDSAGTTHHPSLDVHLHEADQEPISSHNVKEHNLGEDMAHEDNSLALMNKWSPTMLFNSLHNSGILQEHQFAEFQSLGKQWEAYSNQI*

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