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Report for Sequence Feature Glyma.17g120900

Feature Type:gene_model
Chromosome:Gm17
Start:9629771
stop:9638880
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g120900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18520.1AT histone deacetylase 15 JGI N/AIEA
GO:0006325GO-bp chromatin organization EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0016569GO-bp covalent chromatin modification EnsemblGenomesN/AIEA
GO:0016575GO-bp histone deacetylation EnsemblGenomesN/AIEA
GO:0070932GO-bp histone H3 deacetylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0004407GO-mf histone deacetylase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0032041GO-mf NAD-dependent histone deacetylase activity (H3-K14 specific) EnsemblGenomesN/AIEA
KOG1342 KOG Histone deacetylase complex, catalytic component RPD3 JGI N/AIEA
PTHR10625Panther HISTONE DEACETYLASE JGI N/AIEA
PTHR10625:SF22Panther JGI N/AIEA
PF00850PFAM Histone deacetylase domain JGI N/AIEA

Proteins Associated with Glyma.17g120900
LocusGene SymbolProtein Name
HDA17 histone deacetylase

Expression Patterns of Glyma.17g120900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g120900
ParalogEvidenceComments
Glyma.05g012900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g120900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g13000 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g120900
>Glyma.17g120900.2 sequence-type=transcript locus=Glyma.17g120900 ID=Glyma.17g120900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTAAACATGTTGTGTTTCATGTGTGGCTGTGTTGTTTAGCCTGCAAAGAGAGCCAGGCTGCAGAAGGAACAGAAGGATTTGACCTTTCAGGACATATATCAAAATGATGGCGTGTTTGACGACGAAGACAGTGATTGGGAGCCGTTTCAGTTACACAAGTGTATGGATTTTGAAATCAAAAAGTGGTTCTGCAGAAATTGTACCATGGTTAACCTCGATCACGATGACTGTTGCTACATATGCGGGGAGCATACGGATTCTAAAATCCTTAGCCATGGGTTTTTTGCATCTCCTTTAGCCCAAGATGAGAATCTGACTGAAGTCCAGGGGATCGCTAAAGGACTGAAAGATGTTGGCTCACAGGAATTAGTGGCAAATAGTTCTACAGCAATCGGCTTTGATGAGAGAATGTTGTTACATGCAGAAGTTGAAAAGAAATCCACTCTGCATCCTGAGAGGCCAGATCGTCTTCAAGCAATTGCTGCTAGTCTTGCTAGAGCTGGCATATTTCCTGGAAAATGCTATTCAATTCCTGCTAGAGAAATCACACCAGAAGAACTTATTACGGTTCATTCCTTGGAGCATATTGAATCTGTGGAAGTTACAAGCGAATCACTTTCTAGTTATTTCACTTCTGACACATATGCCAATGAGCATTCAGCACTTGCTGCTAGGTTGGCAGCTGGGTTATGTGCTGATCTAGCATCAGCAATTGTTTCTGAGCGAGCCAAAAATGGATTTGCTTTGGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACATGCAATGGGGTTCTGCCTTCACAATAATGCTGCTGTGGCTGCATTGGCAGCTCAAGCTGCAGGGGCTAGGAAGGTGCTAATTTTGGATTGGGATGTTCATCACGGAAATGGGACACAAGAAATATTTGAACAAAACAAATCGGTCTTGTATATATCATTGCATAGACACGAGGGAGGAAAATTTTATCCTGGTACTGGAGCTGCTGAAGAGGTTGGTAGTATGGGTGCAGAAGGATACTGTGTGAATATTCCATGGAGTCGAGGAGGAGTTGGTGACAATGACTATATTTTTTCATTTCAGCATGTTGTCCTTCCTATAGCTGCTGAGTTTAATCCAGATTTTACCATAGTATCTGCTGGATTTGATGCTGCAAGAGGTGATCCCCTAGGATGTTGCGATATTACTCCCTCTGGCTATGCACATATGACACATATGTTGAATGCCCTTTCTGGCGGAAAATTGCTTGTTATTCTTGAGGGGGGCTATAATCTTCGTTCTATATCATCTTCTGCAACTGCAGTAATCAAGGTATTACTGGGTGAGAGTCCTGGATGTGAACTGGAAAATAGTTTCCCTTCCAAAGCTGGCCTGCAAACTGTTTTGGAAGTCCTCAAAATTCAGATGAACTTTTGGCCTGCCCTGGGTCCCATTTTTGTGACTTTGGAGTCACAATGGAGGGTGTACTGTTTTGGAAAAAAAAGGAAACATATTAAGAAACGACACCGAATTCTGGTTCCAATGTGGAGGTGGGGACGAAAGTTTATTATTCCATTTTCTGAACGGCCACCTTAATGTAAAATCAAAATTATGTTGAGCTGATGAATTTTGTAAGCATGGGAAATACATAGTAGTTATCAGCATGCTGTACATTCCATCTTCAGGACAATATGATTTTTGTTTGATCGTGCAAATGATAGATTTGTGCGTAAGGGTGAGACAAATCGGGGAAAGAAGGGGAGGGTGGCAAGTGTTAAAGGATAAAAATGATTTCCCAGTTCCTTGTTTGATCATTGAATTTTGATAGTTTACCAACTGGGAAATATGAGAAATTAAAGCACTTTCTGCTCCAACAAAAAAAACTTGTGGCAAATTCAAAGATGTGTGGTGGTGACATGTCATCTTTTATTTTCATTGTTTCTGGTTTAAATCCAAAAACTTATAAACAAGTTTGAATACTTTTGCGGCATTAGTTGAAGTAAAACTGAAAACAAGATCTATCTTAACATGGGTTAATATGCTGCTGTCTTGTGGCCTTGTTTTTTAGTTATTTATATAACCATCTCAATAAAGTGGCTTTCATCCACTGGTTGATAGTCTTGAGAAGCATAACCTTTCAATTTGATACGTACAGAATTTTTCATTCTTGAACGTTACAACTGAGTTTTCAGTTGGTCAGGCGCAGTAGCCACTTGGTATAATTTGGGAGACAATGGTTCTGCCAGTTGTGGACTAAGCTTAAGTGGTAAGTTGCATTTGGTTTTGTCCTGGGGGACTTAATATGCTTAATCTCTACTGTTACGGAACAGCTGACAATGGAAGCAAACAAATTGTTGCCTATCTTGTTTGGCACCCTTTACACGAACTGAACTTTATTGAGCTGTATATGTGGATCTTGTCCGAAATAATTTGAGGGTTTCCAGTCCAGGGTTCTTTGTATGAGCCAGAGGATGGAGATGGAATGGAGGTGATGGCAAACATAGACATAGATATAGCAGTAGACATAAAGCCACCAATTCCTCCCTCTCTCCTCTATAAAACTCAGATATCTTGTGCTTGACTCAATATGAATTTGAATGCTTTTAATGAAGATCAAGTTACTTATTGTT
Coding sequences of Glyma.17g120900
>Glyma.17g120900.1 sequence-type=CDS polypeptide=Glyma.17g120900.1.p locus=Glyma.17g120900 ID=Glyma.17g120900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTAGTGGAGCTCTCAAAACGACTGAGAACAGTCTTCACAAGCAAGCTTCTCAGGTTTCCGATGCCAATGATGCAGTTGCTGACCCTGATATTCCTGCAAAGAGAGCCAGGCTGCAGAAGGAACAGAAGGATTTGACCTTTCAGGACATATATCAAAATGATGGCGTGTTTGACGACGAAGACAGTGATTGGGAGCCGTTTCAGTTACACAAGTGTATGGATTTTGAAATCAAAAAGTGGTTCTGCAGAAATTGTACCATGGTTAACCTCGATCACGATGACTGTTGCTACATATGCGGGGAGCATACGGATTCTAAAATCCTTAGCCATGGGTTTTTTGCATCTCCTTTAGCCCAAGATGAGAATCTGACTGAAGTCCAGGGGATCGCTAAAGGACTGAAAGATGTTGGCTCACAGGAATTAGTGGCAAATAGTTCTACAGCAATCGGCTTTGATGAGAGAATGTTGTTACATGCAGAAGTTGAAAAGAAATCCACTCTGCATCCTGAGAGGCCAGATCGTCTTCAAGCAATTGCTGCTAGTCTTGCTAGAGCTGGCATATTTCCTGGAAAATGCTATTCAATTCCTGCTAGAGAAATCACACCAGAAGAACTTATTACGGTTCATTCCTTGGAGCATATTGAATCTGTGGAAGTTACAAGCGAATCACTTTCTAGTTATTTCACTTCTGACACATATGCCAATGAGCATTCAGCACTTGCTGCTAGGTTGGCAGCTGGGTTATGTGCTGATCTAGCATCAGCAATTGTTTCTGAGCGAGCCAAAAATGGATTTGCTTTGGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACATGCAATGGGGTTCTGCCTTCACAATAATGCTGCTGTGGCTGCATTGGCAGCTCAAGCTGCAGGGGCTAGGAAGGTGCTAATTTTGGATTGGGATGTTCATCACGGAAATGGGACACAAGAAATATTTGAACAAAACAAATCGGTCTTGTATATATCATTGCATAGACACGAGGGAGGAAAATTTTATCCTGGTACTGGAGCTGCTGAAGAGGTTGGTAGTATGGGTGCAGAAGGATACTGTGTGAATATTCCATGGAGTCGAGGAGGAGTTGGTGACAATGACTATATTTTTTCATTTCAGCATGTTGTCCTTCCTATAGCTGCTGAGTTTAATCCAGATTTTACCATAGTATCTGCTGGATTTGATGCTGCAAGAGGTGATCCCCTAGGATGTTGCGATATTACTCCCTCTGGCTATGCACATATGACACATATGTTGAATGCCCTTTCTGGCGGAAAATTGCTTGTTATTCTTGAGGGGGGCTATAATCTTCGTTCTATATCATCTTCTGCAACTGCAGTAATCAAGGTATTACTGGGTGAGAGTCCTGGATGTGAACTGGAAAATAGTTTCCCTTCCAAAGCTGGCCTGCAAACTGTTTTGGAAGTCCTCAAAATTCAGATGAACTTTTGGCCTGCCCTGGGTCCCATTTTTGTGACTTTGGAGTCACAATGGAGGGTGTACTGTTTTGGAAAAAAAAGGAAACATATTAAGAAACGACACCGAATTCTGGTTCCAATGTGGAGGTGGGGACGAAAGTTTATTATTCCATTTTCTGAACGGCCACCTTAA

>Glyma.17g120900.2 sequence-type=CDS polypeptide=Glyma.17g120900.2.p locus=Glyma.17g120900 ID=Glyma.17g120900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTTGAAATCAAAAAGTGGTTCTGCAGAAATTGTACCATGGTTAACCTCGATCACGATGACTGTTGCTACATATGCGGGGAGCATACGGATTCTAAAATCCTTAGCCATGGGTTTTTTGCATCTCCTTTAGCCCAAGATGAGAATCTGACTGAAGTCCAGGGGATCGCTAAAGGACTGAAAGATGTTGGCTCACAGGAATTAGTGGCAAATAGTTCTACAGCAATCGGCTTTGATGAGAGAATGTTGTTACATGCAGAAGTTGAAAAGAAATCCACTCTGCATCCTGAGAGGCCAGATCGTCTTCAAGCAATTGCTGCTAGTCTTGCTAGAGCTGGCATATTTCCTGGAAAATGCTATTCAATTCCTGCTAGAGAAATCACACCAGAAGAACTTATTACGGTTCATTCCTTGGAGCATATTGAATCTGTGGAAGTTACAAGCGAATCACTTTCTAGTTATTTCACTTCTGACACATATGCCAATGAGCATTCAGCACTTGCTGCTAGGTTGGCAGCTGGGTTATGTGCTGATCTAGCATCAGCAATTGTTTCTGAGCGAGCCAAAAATGGATTTGCTTTGGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACATGCAATGGGGTTCTGCCTTCACAATAATGCTGCTGTGGCTGCATTGGCAGCTCAAGCTGCAGGGGCTAGGAAGGTGCTAATTTTGGATTGGGATGTTCATCACGGAAATGGGACACAAGAAATATTTGAACAAAACAAATCGGTCTTGTATATATCATTGCATAGACACGAGGGAGGAAAATTTTATCCTGGTACTGGAGCTGCTGAAGAGGTTGGTAGTATGGGTGCAGAAGGATACTGTGTGAATATTCCATGGAGTCGAGGAGGAGTTGGTGACAATGACTATATTTTTTCATTTCAGCATGTTGTCCTTCCTATAGCTGCTGAGTTTAATCCAGATTTTACCATAGTATCTGCTGGATTTGATGCTGCAAGAGGTGATCCCCTAGGATGTTGCGATATTACTCCCTCTGGCTATGCACATATGACACATATGTTGAATGCCCTTTCTGGCGGAAAATTGCTTGTTATTCTTGAGGGGGGCTATAATCTTCGTTCTATATCATCTTCTGCAACTGCAGTAATCAAGGTATTACTGGGTGAGAGTCCTGGATGTGAACTGGAAAATAGTTTCCCTTCCAAAGCTGGCCTGCAAACTGTTTTGGAAGTCCTCAAAATTCAGATGAACTTTTGGCCTGCCCTGGGTCCCATTTTTGTGACTTTGGAGTCACAATGGAGGGTGTACTGTTTTGGAAAAAAAAGGAAACATATTAAGAAACGACACCGAATTCTGGTTCCAATGTGGAGGTGGGGACGAAAGTTTATTATTCCATTTTCTGAACGGCCACCTTAA
Predicted protein sequences of Glyma.17g120900
>Glyma.17g120900.1.p sequence-type=predicted peptide transcript=Glyma.17g120900.1 locus=Glyma.17g120900 ID=Glyma.17g120900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSGALKTTENSLHKQASQVSDANDAVADPDIPAKRARLQKEQKDLTFQDIYQNDGVFDDEDSDWEPFQLHKCMDFEIKKWFCRNCTMVNLDHDDCCYICGEHTDSKILSHGFFASPLAQDENLTEVQGIAKGLKDVGSQELVANSSTAIGFDERMLLHAEVEKKSTLHPERPDRLQAIAASLARAGIFPGKCYSIPAREITPEELITVHSLEHIESVEVTSESLSSYFTSDTYANEHSALAARLAAGLCADLASAIVSERAKNGFALVRPPGHHAGVRHAMGFCLHNNAAVAALAAQAAGARKVLILDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGKFYPGTGAAEEVGSMGAEGYCVNIPWSRGGVGDNDYIFSFQHVVLPIAAEFNPDFTIVSAGFDAARGDPLGCCDITPSGYAHMTHMLNALSGGKLLVILEGGYNLRSISSSATAVIKVLLGESPGCELENSFPSKAGLQTVLEVLKIQMNFWPALGPIFVTLESQWRVYCFGKKRKHIKKRHRILVPMWRWGRKFIIPFSERPP*

>Glyma.17g120900.2.p sequence-type=predicted peptide transcript=Glyma.17g120900.2 locus=Glyma.17g120900 ID=Glyma.17g120900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDFEIKKWFCRNCTMVNLDHDDCCYICGEHTDSKILSHGFFASPLAQDENLTEVQGIAKGLKDVGSQELVANSSTAIGFDERMLLHAEVEKKSTLHPERPDRLQAIAASLARAGIFPGKCYSIPAREITPEELITVHSLEHIESVEVTSESLSSYFTSDTYANEHSALAARLAAGLCADLASAIVSERAKNGFALVRPPGHHAGVRHAMGFCLHNNAAVAALAAQAAGARKVLILDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGKFYPGTGAAEEVGSMGAEGYCVNIPWSRGGVGDNDYIFSFQHVVLPIAAEFNPDFTIVSAGFDAARGDPLGCCDITPSGYAHMTHMLNALSGGKLLVILEGGYNLRSISSSATAVIKVLLGESPGCELENSFPSKAGLQTVLEVLKIQMNFWPALGPIFVTLESQWRVYCFGKKRKHIKKRHRILVPMWRWGRKFIIPFSERPP*






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