Glyma.17g120400

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Report for Sequence Feature Glyma.17g120400

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9570425
stop:	9574806
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g120400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08510.1	AT	fatty acyl-ACP thioesterases B	JGI	N/A	IEA
GO:0006629	GO-bp	lipid metabolic process	EnsemblGenomes	N/A	IEA
GO:0006631	GO-bp	fatty acid metabolic process	EnsemblGenomes	N/A	IEA
GO:0006633	GO-bp	fatty acid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0006633	GO-bp	fatty acid biosynthetic process	JGI	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0009536	GO-cc	plastid	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
GO:0016790	GO-mf	thiolester hydrolase activity	EnsemblGenomes	N/A	IEA
GO:0016790	GO-mf	thiolester hydrolase activity	JGI	N/A	IEA
PF01643	PFAM	Acyl-ACP thioesterase	JGI	N/A	IEA
PF12590	PFAM	Acyl-ATP thioesterase	JGI	N/A	IEA
PWY-5147	SoyCyc9	oleate biosynthesis I (plants)	Plant Metabolic Network		ISS
PWY-5156	SoyCyc9	superpathway of fatty acid biosynthesis II (plant)	Plant Metabolic Network		ISS
PWY-5366	SoyCyc9	palmitoleate biosynthesis II (plants and bacteria)	Plant Metabolic Network		ISS
GN7V-67774	SoyCyc9-rxn	palmitoleoyl-[acp] thioesterase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.17g120400

Locus	Gene Symbol	Protein Name
	FATB1B	myristoyl-acyl carrier protein thioesterase

Expression Patterns of Glyma.17g120400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g120400 not represented in the dataset	Glyma.17g120400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g120400

Paralog	Evidence	Comments
Glyma.05g012300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g120400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g12940	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g120400

Limit To All Plant Sequences

>Glyma.17g120400.2 sequence-type=transcript locus=Glyma.17g120400 ID=Glyma.17g120400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATAAAGAGAGCATTACATTACAATAACTCTGTCTCTCTTTTTTAAAATTAGGGAAACAAGGAAGCAAAATGACACAATAGTCCTTCTTCCCTGTTTCCACTTTCCAGGTTTTCTCCTTCTCGTTTGTTGAGCGCTTTTCTCTCCCTCTCCCTCTTCTTCACTCAGTCAGAGATCCAACTCCTCATATAATTCAAGACAAAATCCCGCGTTTTCTGCATTTCTAGACGTTCTACCCTACAAGCTGCCGTAGAAATTCATTATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAAGATTTTGAAATGGTTAACGGTTGGAGTTGCATCAGTCTCCTTGCTATGTTTAGACTTATTCTGGCCCCTGGGGAGAGTTTTGCTTGTGTCTGTCCAATCAATCTACATATCTTTATATCCTTCTAATTTGTGTTACTTTGGTGGGTAAGGGGGAAAAGCTGCAGTAAACCTCATTCTCTCTTTCTGCTGCTCCATATTTCATTTCATCTCTGATTGCGCTACTGCTAGGCTGTCTTCAATATTTAATTGCTTGATCAAAATAGCTAGGCATGTATATTATTATTCTTTTCTCTTGGCTCAATTAAAGATGCAATTTTCATTGTGAACACAGCataattattattcttattatttttGTATAGCCTGTATGCAAGAATGACTTGTCCATCCAATACAACCGTGATTGTATGCTCCAGCGTGTATTTATGCAAGCTTCCCACATGGGAATTATTGTGTGCA

>Glyma.17g120400.3 sequence-type=transcript locus=Glyma.17g120400 ID=Glyma.17g120400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATAAAGAGAGCATTACATTACAATAACTCTGTCTCTCTTTTTTAAAATTAGGGAAACAAGGAAGCAAAATGACACAATAGTCCTTCTTCCCTGTTTCCACTTTCCAGGTTTTCTCCTTCTCGTTTGTTGAGCGCTTTTCTCTCCCTCTCCCTCTTCTTCACTCAGTCAGCTGCCGTAGAAATTCATTATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAAGATTTTGAAATGGTTAACGGTTGGAGTTGCATCAGTCTCCTTGCTATGTTTAGACTTATTCTGGCCCCTGGGGAGAGTTTTGCTTGTGTCTGTCCAATCAATCTACATATCTTTATATCCTTCTAATTTGTGTTACTTTGGTGGGTAAGGGGGAAAAGCTGCAGTAAACCTCATTCTCTCTTTCTGCTGCTCCATATTTCATTTCATCTCTGATTGCGCTACTGCTAGGCTGTCTTCAATATTTAATTGCTTGATCAAAATAGCTAGGCATGTATATTATTATTCTTTTCTCTTGGCTCAATTAAAGATGCAATTTTCATTGTGAACACAGCataattattattcttattatttttGTATAGCCTGTATGCAAGAATGACTTGTCCATCCAATACAACCGTGATTGTATGCTCCAGCGTGTATTTATGCAAGCTTCCCACATGGGAATTATTGTGTGCA

Coding sequences of Glyma.17g120400

Limit To All Plant Sequences

>Glyma.17g120400.1 sequence-type=CDS polypeptide=Glyma.17g120400.1.p locus=Glyma.17g120400 ID=Glyma.17g120400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAA

>Glyma.17g120400.2 sequence-type=CDS polypeptide=Glyma.17g120400.2.p locus=Glyma.17g120400 ID=Glyma.17g120400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAA

>Glyma.17g120400.3 sequence-type=CDS polypeptide=Glyma.17g120400.3.p locus=Glyma.17g120400 ID=Glyma.17g120400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAA

Predicted protein sequences of Glyma.17g120400

Limit To All Plant Sequences

>Glyma.17g120400.1.p sequence-type=predicted peptide transcript=Glyma.17g120400.1 locus=Glyma.17g120400 ID=Glyma.17g120400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVATAATSSFFPVTSPSPDSGGAGSKLGGGPANLGGLKSKSVSSGGLKAKAQAPLKINGTTVVTSKEILKHEDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWASGSGKNAMRRDWVLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVRQEIGSYFVDSDPILEEDNRKLTKLDDNTADYIRTGLSSRWSDLDINQHVNNVKYIDWILESAPQPILESHELSSVTLEYRRECGRDSVLDSLTAVSGADMGNLAHSGHVECKHLLRLENGAEIVRGRTEWRPKPMNNIGVVNQVPAEST*

>Glyma.17g120400.2.p sequence-type=predicted peptide transcript=Glyma.17g120400.2 locus=Glyma.17g120400 ID=Glyma.17g120400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVATAATSSFFPVTSPSPDSGGAGSKLGGGPANLGGLKSKSVSSGGLKAKAQAPLKINGTTVVTSKEILKHEDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWASGSGKNAMRRDWVLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVRQEIGSYFVDSDPILEEDNRKLTKLDDNTADYIRTGLSSRWSDLDINQHVNNVKYIDWILESAPQPILESHELSSVTLEYRRECGRDSVLDSLTAVSGADMGNLAHSGHVECKHLLRLENGAEIVRGRTEWRPKPMNNIGVVNQVPAEST*

>Glyma.17g120400.3.p sequence-type=predicted peptide transcript=Glyma.17g120400.3 locus=Glyma.17g120400 ID=Glyma.17g120400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVATAATSSFFPVTSPSPDSGGAGSKLGGGPANLGGLKSKSVSSGGLKAKAQAPLKINGTTVVTSKEILKHEDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWASGSGKNAMRRDWVLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVRQEIGSYFVDSDPILEEDNRKLTKLDDNTADYIRTGLSSRWSDLDINQHVNNVKYIDWILESAPQPILESHELSSVTLEYRRECGRDSVLDSLTAVSGADMGNLAHSGHVECKHLLRLENGAEIVRGRTEWRPKPMNNIGVVNQVPAEST*

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