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Report for Sequence Feature Glyma.17g120400

Feature Type:gene_model
Chromosome:Gm17
Start:9570425
stop:9574806
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g120400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08510.1AT fatty acyl-ACP thioesterases B JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006631GO-bp fatty acid metabolic process EnsemblGenomesN/AIEA
GO:0006633GO-bp fatty acid biosynthetic process EnsemblGenomesN/AIEA
GO:0006633GO-bp fatty acid biosynthetic process JGI N/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016790GO-mf thiolester hydrolase activity EnsemblGenomesN/AIEA
GO:0016790GO-mf thiolester hydrolase activity JGI N/AIEA
PF01643PFAM Acyl-ACP thioesterase JGI N/AIEA
PF12590PFAM Acyl-ATP thioesterase JGI N/AIEA
PWY-5147SoyCyc9 oleate biosynthesis I (plants) Plant Metabolic Network ISS
PWY-5156SoyCyc9 superpathway of fatty acid biosynthesis II (plant) Plant Metabolic Network ISS
PWY-5366SoyCyc9 palmitoleate biosynthesis II (plants and bacteria) Plant Metabolic Network ISS
GN7V-67774SoyCyc9-rxn palmitoleoyl-[acp] thioesterase Plant Metabolic Network ISS

Proteins Associated with Glyma.17g120400
LocusGene SymbolProtein Name
FATB1B myristoyl-acyl carrier protein thioesterase

Expression Patterns of Glyma.17g120400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g120400
ParalogEvidenceComments
Glyma.05g012300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g120400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g12940 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g120400
>Glyma.17g120400.2 sequence-type=transcript locus=Glyma.17g120400 ID=Glyma.17g120400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATAAAGAGAGCATTACATTACAATAACTCTGTCTCTCTTTTTTAAAATTAGGGAAACAAGGAAGCAAAATGACACAATAGTCCTTCTTCCCTGTTTCCACTTTCCAGGTTTTCTCCTTCTCGTTTGTTGAGCGCTTTTCTCTCCCTCTCCCTCTTCTTCACTCAGTCAGAGATCCAACTCCTCATATAATTCAAGACAAAATCCCGCGTTTTCTGCATTTCTAGACGTTCTACCCTACAAGCTGCCGTAGAAATTCATTATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAAGATTTTGAAATGGTTAACGGTTGGAGTTGCATCAGTCTCCTTGCTATGTTTAGACTTATTCTGGCCCCTGGGGAGAGTTTTGCTTGTGTCTGTCCAATCAATCTACATATCTTTATATCCTTCTAATTTGTGTTACTTTGGTGGGTAAGGGGGAAAAGCTGCAGTAAACCTCATTCTCTCTTTCTGCTGCTCCATATTTCATTTCATCTCTGATTGCGCTACTGCTAGGCTGTCTTCAATATTTAATTGCTTGATCAAAATAGCTAGGCATGTATATTATTATTCTTTTCTCTTGGCTCAATTAAAGATGCAATTTTCATTGTGAACACAGCataattattattcttattatttttGTATAGCCTGTATGCAAGAATGACTTGTCCATCCAATACAACCGTGATTGTATGCTCCAGCGTGTATTTATGCAAGCTTCCCACATGGGAATTATTGTGTGCA

>Glyma.17g120400.3 sequence-type=transcript locus=Glyma.17g120400 ID=Glyma.17g120400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATAAAGAGAGCATTACATTACAATAACTCTGTCTCTCTTTTTTAAAATTAGGGAAACAAGGAAGCAAAATGACACAATAGTCCTTCTTCCCTGTTTCCACTTTCCAGGTTTTCTCCTTCTCGTTTGTTGAGCGCTTTTCTCTCCCTCTCCCTCTTCTTCACTCAGTCAGCTGCCGTAGAAATTCATTATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAAGATTTTGAAATGGTTAACGGTTGGAGTTGCATCAGTCTCCTTGCTATGTTTAGACTTATTCTGGCCCCTGGGGAGAGTTTTGCTTGTGTCTGTCCAATCAATCTACATATCTTTATATCCTTCTAATTTGTGTTACTTTGGTGGGTAAGGGGGAAAAGCTGCAGTAAACCTCATTCTCTCTTTCTGCTGCTCCATATTTCATTTCATCTCTGATTGCGCTACTGCTAGGCTGTCTTCAATATTTAATTGCTTGATCAAAATAGCTAGGCATGTATATTATTATTCTTTTCTCTTGGCTCAATTAAAGATGCAATTTTCATTGTGAACACAGCataattattattcttattatttttGTATAGCCTGTATGCAAGAATGACTTGTCCATCCAATACAACCGTGATTGTATGCTCCAGCGTGTATTTATGCAAGCTTCCCACATGGGAATTATTGTGTGCA
Coding sequences of Glyma.17g120400
>Glyma.17g120400.1 sequence-type=CDS polypeptide=Glyma.17g120400.1.p locus=Glyma.17g120400 ID=Glyma.17g120400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAA

>Glyma.17g120400.2 sequence-type=CDS polypeptide=Glyma.17g120400.2.p locus=Glyma.17g120400 ID=Glyma.17g120400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAA

>Glyma.17g120400.3 sequence-type=CDS polypeptide=Glyma.17g120400.3.p locus=Glyma.17g120400 ID=Glyma.17g120400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAA
Predicted protein sequences of Glyma.17g120400
>Glyma.17g120400.1.p sequence-type=predicted peptide transcript=Glyma.17g120400.1 locus=Glyma.17g120400 ID=Glyma.17g120400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVATAATSSFFPVTSPSPDSGGAGSKLGGGPANLGGLKSKSVSSGGLKAKAQAPLKINGTTVVTSKEILKHEDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWASGSGKNAMRRDWVLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVRQEIGSYFVDSDPILEEDNRKLTKLDDNTADYIRTGLSSRWSDLDINQHVNNVKYIDWILESAPQPILESHELSSVTLEYRRECGRDSVLDSLTAVSGADMGNLAHSGHVECKHLLRLENGAEIVRGRTEWRPKPMNNIGVVNQVPAEST*

>Glyma.17g120400.2.p sequence-type=predicted peptide transcript=Glyma.17g120400.2 locus=Glyma.17g120400 ID=Glyma.17g120400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVATAATSSFFPVTSPSPDSGGAGSKLGGGPANLGGLKSKSVSSGGLKAKAQAPLKINGTTVVTSKEILKHEDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWASGSGKNAMRRDWVLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVRQEIGSYFVDSDPILEEDNRKLTKLDDNTADYIRTGLSSRWSDLDINQHVNNVKYIDWILESAPQPILESHELSSVTLEYRRECGRDSVLDSLTAVSGADMGNLAHSGHVECKHLLRLENGAEIVRGRTEWRPKPMNNIGVVNQVPAEST*

>Glyma.17g120400.3.p sequence-type=predicted peptide transcript=Glyma.17g120400.3 locus=Glyma.17g120400 ID=Glyma.17g120400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVATAATSSFFPVTSPSPDSGGAGSKLGGGPANLGGLKSKSVSSGGLKAKAQAPLKINGTTVVTSKEILKHEDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWASGSGKNAMRRDWVLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVRQEIGSYFVDSDPILEEDNRKLTKLDDNTADYIRTGLSSRWSDLDINQHVNNVKYIDWILESAPQPILESHELSSVTLEYRRECGRDSVLDSLTAVSGADMGNLAHSGHVECKHLLRLENGAEIVRGRTEWRPKPMNNIGVVNQVPAEST*






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