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Report for Sequence Feature Glyma.17g116500

Feature Type:gene_model
Chromosome:Gm17
Start:9199427
stop:9201897
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g116500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G15410.1AT aspartate-glutamate racemase family JGI N/AIEA
GO:0006520GO-bp cellular amino acid metabolic process EnsemblGenomesN/AIEA
GO:0006807GO-bp nitrogen compound metabolic process EnsemblGenomesN/AIEA
GO:0006807GO-bp nitrogen compound metabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0016855GO-mf racemase and epimerase activity, acting on amino acids and derivatives EnsemblGenomesN/AIEA
GO:0036361GO-mf racemase activity, acting on amino acids and derivatives EnsemblGenomesN/AIEA
GO:0036361GO-mf racemase activity, acting on amino acids and derivatives JGI N/AIEA
PF01177PFAM Asp/Glu/Hydantoin racemase JGI N/AIEA
GN7V-66651SoyCyc9-rxn aspartate racemase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g116500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g116500 not represented in the dataset
Glyma.17g116500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g116500
ParalogEvidenceComments
Glyma.05g008200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g116500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g12541 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g116500
>Glyma.17g116500.1 sequence-type=CDS polypeptide=Glyma.17g116500.1.p locus=Glyma.17g116500 ID=Glyma.17g116500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAGAGATGCTAGAAAGGGGCATATTGATGTCTGTGCAGACAATGAATCACCCTCCATTTCTTACTGGTGATGCCTTTAGAAAGAGGACTCAGACTCGGTGCAGAGGGAGAGCAAATTCAAGCACAGCTTTGCAGTTATCTTCTGATGAGAGTGGAAACTATGCAGAACCATGTACTTCCCTTCTAAGCCAACCAAACACTATTGGTGTTATAGGAGGGGTATCACTTCTATCAACTCTGATTTTCTTGGAGAAACTTGCTTGTTGGGGTTCAAGAAATGGTAAAGAATGTCCACCTTTTGTTGTTTCCAGTGATCCTGCGTTGAGCAAAATGCTTTCATTACGCGGTCCCCTCCCTTCAGCAAGGACCAGATTTGATCGTATCAAATTGAATCAGGACCTTGTGATTGAGAATTTGCGGTGCAAAAGGAACTTTCTTCAGCAGTCTGGAGCTCGGGGTTTGGCCATGCCTTGCCATCTCTCACATGCGTGGCACAGTGAAATTTCTGAGGATAGTTCACTACCCTTTCTTCATGTTGGTGATTGTGTGGCCATGGAACTCAAGAACGCCAAGTTGAAGCCAATTCATGCTGCTGGTATTGTGAGGATTGGACTGCTGACAACTGATTCAAATTTTGTAGCTAGTTATTACCAGGAGAGGCTTCAAAGTCAGGGATTCGAAGTAGTGTTGCTAGACAAAGCAACCGAAGAACATGTATTGGTTCCTGCAATGGAGGCATTGTACAGAAAGGACATAGAAGGGGCAAGGAATTTATTGAGGATTGCAATCCATGTTCTTTTGGTTAGGGCAGTGAACTTGGTGCTTCTGGCATCTGATGATTTGCTAGGGGTTCTCCCTCACAATGATCCTCTTCTAAGGAAATGTATAGACCCCATGGATGCTTTGGCCAGGTCAACTATACACTGGGCAGAAACAATGGTAAAGGTACACGAGAAGCTTTAG
Predicted protein sequences of Glyma.17g116500
>Glyma.17g116500.1.p sequence-type=predicted peptide transcript=Glyma.17g116500.1 locus=Glyma.17g116500 ID=Glyma.17g116500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLEMLERGILMSVQTMNHPPFLTGDAFRKRTQTRCRGRANSSTALQLSSDESGNYAEPCTSLLSQPNTIGVIGGVSLLSTLIFLEKLACWGSRNGKECPPFVVSSDPALSKMLSLRGPLPSARTRFDRIKLNQDLVIENLRCKRNFLQQSGARGLAMPCHLSHAWHSEISEDSSLPFLHVGDCVAMELKNAKLKPIHAAGIVRIGLLTTDSNFVASYYQERLQSQGFEVVLLDKATEEHVLVPAMEALYRKDIEGARNLLRIAIHVLLVRAVNLVLLASDDLLGVLPHNDPLLRKCIDPMDALARSTIHWAETMVKVHEKL*






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