Report for Sequence Feature Glyma.17g116100
Feature Type: gene_model
Chromosome: Gm17
Start: 9177090
stop: 9177898
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.17g116100
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G20100.1 AT
JGI N/A IEA
Expression Patterns of Glyma.17g116100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.17g116100
Paralog Evidence Comments
Glyma.13g168400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.17g116100 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma17g12500 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.17g116100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.17g116100.1 sequence-type=CDS polypeptide=Glyma.17g116100.1.p locus=Glyma.17g116100 ID=Glyma.17g116100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTGAGTTGCAAAGGTCAGTAACATCATTCAGAAGACAAGGGTCTTCGGGATTGGTTTGGGATGACAAATTCATCGCTGGAATTGAGAATCAGAACAAACAAGAAAGTGGTGATGATGGATCAAGTCCCTCGTTGCAGCGAAGCAGATCAGCGGGGGCACCACCTTATCGGACGGTCAACGTTGCACCACAAGCCATGGACCCTCCTTCTCCCAAGCTAGCAACTTGTGGCTTCTGTGCTCTCTTTCGGAAACCGGTTTCTGCCAAACCCAACAAATCTAAAAGACGTACTAGGTGA
Predicted protein sequences of Glyma.17g116100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.17g116100.1.p sequence-type=predicted peptide transcript=Glyma.17g116100.1 locus=Glyma.17g116100 ID=Glyma.17g116100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTELQRSVTSFRRQGSSGLVWDDKFIAGIENQNKQESGDDGSSPSLQRSRSAGAPPYRTVNVAPQAMDPPSPKLATCGFCALFRKPVSAKPNKSKRRTR*