Report for Sequence Feature Glyma.17g115400
Feature Type: gene_model
Chromosome: Gm17
Start: 9137066
stop: 9138692
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.17g115400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G22380.1 AT
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
JGI N/A IEA
GO:0000398 GO-bp
mRNA splicing, via spliceosome
EnsemblGenomes N/A IEA
GO:0000470 GO-bp
maturation of LSU-rRNA
EnsemblGenomes N/A IEA
GO:0030490 GO-bp
maturation of SSU-rRNA
EnsemblGenomes N/A IEA
GO:0042254 GO-bp
ribosome biogenesis
EnsemblGenomes N/A IEA
GO:0005730 GO-cc
nucleolus
EnsemblGenomes N/A IEA
GO:0031428 GO-cc
box C/D snoRNP complex
EnsemblGenomes N/A IEA
GO:0032040 GO-cc
small-subunit processome
EnsemblGenomes N/A IEA
GO:0046540 GO-cc
U4/U6 x U5 tri-snRNP complex
EnsemblGenomes N/A IEA
GO:0071011 GO-cc
precatalytic spliceosome
EnsemblGenomes N/A IEA
GO:1990904 GO-cc
ribonucleoprotein complex
EnsemblGenomes N/A IEA
GO:0003723 GO-mf
RNA binding
EnsemblGenomes N/A IEA
KOG3387
KOG
60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing
JGI N/A IEA
PTHR23105 Panther
RIBOSOMAL PROTEIN L7AE FAMILY MEMBER
JGI N/A IEA
PTHR23105:SF11 Panther
JGI N/A IEA
PF01248 PFAM
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
JGI N/A IEA
Expression Patterns of Glyma.17g115400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.17g115400
Paralog Evidence Comments
Glyma.13g167800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.17g115400 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma17g12430 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.17g115400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.17g115400.1 sequence-type=CDS polypeptide=Glyma.17g115400.1.p locus=Glyma.17g115400 ID=Glyma.17g115400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTCTCAATAACCATACTAGACCTTGTTCAACAAGCTGCCAACTACAAGCAGCTCAAAAAAGGTGCTAATGAAGCCACTAAAACCCTGAACAGGGGTATCTCTGAATTTGTTGTGATGGCTGCTGATACTGAGCCCCTTGAGATTCTTCTACATCTTCCTCTACTTGCTGAGGATAAGAATGTGCCCTACGTGTTTGTCCCTTCAAAACAAGCACTTGGACGTGCATGTGGGGTCACCAGGCCAGTGATTGCTTGTTCTGTGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGGATGCTATTGAGAAGCTTTTAATCTGA
Predicted protein sequences of Glyma.17g115400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.17g115400.1.p sequence-type=predicted peptide transcript=Glyma.17g115400.1 locus=Glyma.17g115400 ID=Glyma.17g115400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTGEAVNPKAYPLADAQLSITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI*