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Report for Sequence Feature Glyma.17g115300

Feature Type:gene_model
Chromosome:Gm17
Start:9122203
stop:9127019
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26690.1AT Major facilitator superfamily protein JGI N/AIEA
GO:0006810GO-bp transport JGI N/AIEA
GO:0006857GO-bp oligopeptide transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005215GO-mf transporter activity EnsemblGenomesN/AIEA
GO:0005215GO-mf transporter activity JGI N/AIEA
GO:0022857GO-mf transmembrane transporter activity EnsemblGenomesN/AIEA
KOG1237 KOG H+/oligopeptide symporter JGI N/AIEA
PTHR11654Panther OLIGOPEPTIDE TRANSPORTER-RELATED JGI N/AIEA
PTHR11654:SF37Panther JGI N/AIEA
PF00854PFAM POT family JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.13g167700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma17g12420 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.17g115300.2 sequence-type=transcript locus=Glyma.17g115300 ID=Glyma.17g115300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAAATGGGGAACCTCTCACCACAAACTTAAGTTGTGAGTTGAAGTTTAGAAGAACAAAGCTTCCCACCTAGCTAGGCCTTTCTATTGTAGCACTCAAGTTTCTTTCTTCGTGGAACTTAAGAAAATGGAAAAAATGAGTTGGACAGTTGCAGACGCCGTGGACTATAAAGGCTTCCCTGCAGACAGGTCCAAAACAGGTGGTTGGGTACCCGCAGCTCTTATTTTAGGGATTGAAATCGTGGAGAGGCTCTCCACCATGGGGATTGCAGTGAACCTGGTAACATACATGATCTCAATCATGCATCTGCCAAGCTCAACTGCAGCCAACACTGTGACTGACTTTATGGGCACATCATTTCTCCTGTGTTTGCTGGGAGGTTTTCTAGCAGATTCCTTCCTTGGCAGATACAAGACAATTGGAATCTTTGCTTCAATACAAACACTGGGTACTGCTACATTAGCAATCTCAACAAAATTGCCAGGGCTACGTCCACCACCTTGCCATGCTAACAGTGACAGCTGCAAACAAGCCAACGGATTCCAAATGGGAATCTTGTACTTGTCACTGTACCTTATTGCACTAGGAACTGGTGGCCTCAAGTCCAGTGTTTCAGGATTTGGTTCTGACCAATTCGATGAGAAAGATGAGAAGGAGAAATCGCAAATGGCCTATTTTTTCAACAGGTTTTTCTTCTTCATCAGTTTTGGAACTCTGGCAGCTGTCACAGTACTTGTCTATCTGCAAGATGAAGTGAGTCGCAGCTTGGCGTATGGAATATGTTCTGTCTCTATGATCATAGCCATTATCGTGTTCTTATCAGGAACTAAAAGATACAGATACAAGAGGAGTTTGGGGAGCCCCATTGTCCACATTTTCCAAGTTATTGCTGCATCAATAAAGAAAAGAAAGATGCAACTCCCATACAATGTTGGTTCTTTGTATGAGGACACTCCCGAGGCTTCAAGAATAGAGCACACCGAACAGTTCCGTTTCTTGGAGAAAGCAGCCATTGTGGCAGAAGATGATTTTGAGACAAATTTATGTGGTTCTGGACCAAACCCATGGAAATTATGCTCACTAACAAGGGTAGAGGAGGTGAAAATGATGGTGAGACTTCTGCCAGTGTGGGCCACAACCATCATATTTTGGACCATTTACGCACAGTTGATCACCTTTTCAGTTGAGCAAGCCTCCACCATGGAAAGGAATATTGGGAGTTTCCAAATCCCTGCAGGCTCTGTCACAGTCTTTTTTGTGGCTGCAATACTAATCACTCTGGCTGTCTATGACCGACTCATCATGCCCCTTTGGAAAAAGTGGAACGGCAAACCAGGTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTGGAATGGCGGCTGCTTCTGTATGCGAGAGGAAACGGTTATCCGTTGCAAAAAGTGTTAGTGGCGGCAACCAAGCAACAACAACACTTCCTATAAGCGTTTTCCTTCTGATCCCACAGTTCTTCTTGGTGGGTTCTGGTGAAGCATTCATATACACAGGCCAACTTGATTTCTTCATAACACGGTCACCAAAAGGAATGAAAACCATGAGCACTGGTCTCTTTCTCACAACTTTGTCTCTCGGTTTCTTCTTCAGCAGTTTCCTTGTCTCGGTTGTTAAGAAAGTTACTGGGACAAGAGATGGGCAAGGGTGGCTAGCAGACAGCATAAACAAGGGCAGGCTCGATTTGTTCTATGCACTGCTTACCATACTTAGTTTCGTTAACTTTGCAGCATTTGCGGTATGTGCAGTTTGGTTCAAACCTAAGAAACCTAAACAACCAGCTGCTATGCAAATGGGGCCAGTTAATGGGTCCACAGCAGAGGAAAAGTGCTGAAGGCTGAATAGTTTTTAGGATTTGGGGATTATATATATAGTCTTTATACCCATTATTAATGCTATCATATGGTTTTGCTGCTTTGTAGATAGGCTGTTATGTGTATGTATCCGAAGAATGGATTGATTTTGTGTTTCTCTTCCTGATATTATAGAATAATGTTTGGGTTGGCATCTTTGTACGCATAATTAAGCGTGTAACATAGTTTCTGGTCTGTTACACTTTTCTCAATCATCAGGCTTTCTTTTTAATTTGTTAA

>Glyma.17g115300.1 sequence-type=CDS polypeptide=Glyma.17g115300.1.p locus=Glyma.17g115300 ID=Glyma.17g115300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGAAAAAATGAGTTGGACAGTTGCAGACGCCGTGGACTATAAAGGCTTCCCTGCAGACAGGTCCAAAACAGGTGGTTGGGTACCCGCAGCTCTTATTTTAGGGATTGAAATCGTGGAGAGGCTCTCCACCATGGGGATTGCAGTGAACCTGGTAACATACATGATCTCAATCATGCATCTGCCAAGCTCAACTGCAGCCAACACTGTGACTGACTTTATGGGCACATCATTTCTCCTGTGTTTGCTGGGAGGTTTTCTAGCAGATTCCTTCCTTGGCAGATACAAGACAATTGGAATCTTTGCTTCAATACAAACACTGGGTACTGCTACATTAGCAATCTCAACAAAATTGCCAGGGCTACGTCCACCACCTTGCCATGCTAACAGTGACAGCTGCAAACAAGCCAACGGATTCCAAATGGGAATCTTGTACTTGTCACTGTACCTTATTGCACTAGGAACTGGTGGCCTCAAGTCCAGTGTTTCAGGATTTGGTTCTGACCAATTCGATGAGAAAGATGAGAAGGAGAAATCGCAAATGGCCTATTTTTTCAACAGGTTTTTCTTCTTCATCAGTTTTGGAACTCTGGCAGCTGTCACAGTACTTGTCTATCTGCAAGATGAAGTGAGTCGCAGCTTGGCGTATGGAATATGTTCTGTCTCTATGATCATAGCCATTATCGTGTTCTTATCAGGAACTAAAAGATACAGATACAAGAGGAGTTTGGGGAGCCCCATTGTCCACATTTTCCAAGTTATTGCTGCATCAATAAAGAAAAGAAAGATGCAACTCCCATACAATGTTGGTTCTTTGTATGAGGACACTCCCGAGGCTTCAAGAATAGAGCACACCGAACAGTTCCGTTTCTTGGAGAAAGCAGCCATTGTGGCAGAAGATGATTTTGAGACAAATTTATGTGGTTCTGGACCAAACCCATGGAAATTATGCTCACTAACAAGGGTAGAGGAGGTGAAAATGATGGTGAGACTTCTGCCAGTGTGGGCCACAACCATCATATTTTGGACCATTTACGCACAGTTGATCACCTTTTCAGTTGAGCAAGCCTCCACCATGGAAAGGAATATTGGGAGTTTCCAAATCCCTGCAGGCTCTGTCACAGTCTTTTTTGTGGCTGCAATACTAATCACTCTGGCTGTCTATGACCGACTCATCATGCCCCTTTGGAAAAAGTGGAACGGCAAACCAGGTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTGGAATGGCGGCTGCTTCTGTATGCGAGAGGAAACGGTTATCCGTTGCAAAAAGTGTTAGTGGCGGCAACCAAGCAACAACAACACTTCCTATAAGCGTTTTCCTTCTGATCCCACAGTTCTTCTTGGTGGGTTCTGGTGAAGCATTCATATACACAGGCCAACTTGATTTCTTCATAACACGGTCACCAAAAGGAATGAAAACCATGAGCACTGGTCTCTTTCTCACAACTTTGTCTCTCGGTTTCTTCTTCAGCAGTTTCCTTGTCTCGGTTGTTAAGAAAGTTACTGGGACAAGAGATGGGCAAGGGTGGCTAGCAGACAGCATAAACAAGGGCAGGCTCGATTTGTTCTATGCACTGCTTACCATACTTAGTTTCGTTAACTTTGCAGCATTTGCGGTATGTGCAGTTTGGTTCAAACCTAAGAAACCTAAACAACCAGCTGCTATGCAAATGGGGCCAGTTAATGGGTCCACAGCAGAGGAAAAGTGCTGA

>Glyma.17g115300.2 sequence-type=CDS polypeptide=Glyma.17g115300.2.p locus=Glyma.17g115300 ID=Glyma.17g115300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAAAATGAGTTGGACAGTTGCAGACGCCGTGGACTATAAAGGCTTCCCTGCAGACAGGTCCAAAACAGGTGGTTGGGTACCCGCAGCTCTTATTTTAGGGATTGAAATCGTGGAGAGGCTCTCCACCATGGGGATTGCAGTGAACCTGGTAACATACATGATCTCAATCATGCATCTGCCAAGCTCAACTGCAGCCAACACTGTGACTGACTTTATGGGCACATCATTTCTCCTGTGTTTGCTGGGAGGTTTTCTAGCAGATTCCTTCCTTGGCAGATACAAGACAATTGGAATCTTTGCTTCAATACAAACACTGGGTACTGCTACATTAGCAATCTCAACAAAATTGCCAGGGCTACGTCCACCACCTTGCCATGCTAACAGTGACAGCTGCAAACAAGCCAACGGATTCCAAATGGGAATCTTGTACTTGTCACTGTACCTTATTGCACTAGGAACTGGTGGCCTCAAGTCCAGTGTTTCAGGATTTGGTTCTGACCAATTCGATGAGAAAGATGAGAAGGAGAAATCGCAAATGGCCTATTTTTTCAACAGGTTTTTCTTCTTCATCAGTTTTGGAACTCTGGCAGCTGTCACAGTACTTGTCTATCTGCAAGATGAAGTGAGTCGCAGCTTGGCGTATGGAATATGTTCTGTCTCTATGATCATAGCCATTATCGTGTTCTTATCAGGAACTAAAAGATACAGATACAAGAGGAGTTTGGGGAGCCCCATTGTCCACATTTTCCAAGTTATTGCTGCATCAATAAAGAAAAGAAAGATGCAACTCCCATACAATGTTGGTTCTTTGTATGAGGACACTCCCGAGGCTTCAAGAATAGAGCACACCGAACAGTTCCGTTTCTTGGAGAAAGCAGCCATTGTGGCAGAAGATGATTTTGAGACAAATTTATGTGGTTCTGGACCAAACCCATGGAAATTATGCTCACTAACAAGGGTAGAGGAGGTGAAAATGATGGTGAGACTTCTGCCAGTGTGGGCCACAACCATCATATTTTGGACCATTTACGCACAGTTGATCACCTTTTCAGTTGAGCAAGCCTCCACCATGGAAAGGAATATTGGGAGTTTCCAAATCCCTGCAGGCTCTGTCACAGTCTTTTTTGTGGCTGCAATACTAATCACTCTGGCTGTCTATGACCGACTCATCATGCCCCTTTGGAAAAAGTGGAACGGCAAACCAGGTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTGGAATGGCGGCTGCTTCTGTATGCGAGAGGAAACGGTTATCCGTTGCAAAAAGTGTTAGTGGCGGCAACCAAGCAACAACAACACTTCCTATAAGCGTTTTCCTTCTGATCCCACAGTTCTTCTTGGTGGGTTCTGGTGAAGCATTCATATACACAGGCCAACTTGATTTCTTCATAACACGGTCACCAAAAGGAATGAAAACCATGAGCACTGGTCTCTTTCTCACAACTTTGTCTCTCGGTTTCTTCTTCAGCAGTTTCCTTGTCTCGGTTGTTAAGAAAGTTACTGGGACAAGAGATGGGCAAGGGTGGCTAGCAGACAGCATAAACAAGGGCAGGCTCGATTTGTTCTATGCACTGCTTACCATACTTAGTTTCGTTAACTTTGCAGCATTTGCGGTATGTGCAGTTTGGTTCAAACCTAAGAAACCTAAACAACCAGCTGCTATGCAAATGGGGCCAGTTAATGGGTCCACAGCAGAGGAAAAGTGCTGA

>Glyma.17g115300.1.p sequence-type=predicted peptide transcript=Glyma.17g115300.1 locus=Glyma.17g115300 ID=Glyma.17g115300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKEKMSWTVADAVDYKGFPADRSKTGGWVPAALILGIEIVERLSTMGIAVNLVTYMISIMHLPSSTAANTVTDFMGTSFLLCLLGGFLADSFLGRYKTIGIFASIQTLGTATLAISTKLPGLRPPPCHANSDSCKQANGFQMGILYLSLYLIALGTGGLKSSVSGFGSDQFDEKDEKEKSQMAYFFNRFFFFISFGTLAAVTVLVYLQDEVSRSLAYGICSVSMIIAIIVFLSGTKRYRYKRSLGSPIVHIFQVIAASIKKRKMQLPYNVGSLYEDTPEASRIEHTEQFRFLEKAAIVAEDDFETNLCGSGPNPWKLCSLTRVEEVKMMVRLLPVWATTIIFWTIYAQLITFSVEQASTMERNIGSFQIPAGSVTVFFVAAILITLAVYDRLIMPLWKKWNGKPGFTDLQRIAIGLVFSIFGMAAASVCERKRLSVAKSVSGGNQATTTLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITRSPKGMKTMSTGLFLTTLSLGFFFSSFLVSVVKKVTGTRDGQGWLADSINKGRLDLFYALLTILSFVNFAAFAVCAVWFKPKKPKQPAAMQMGPVNGSTAEEKC*

>Glyma.17g115300.2.p sequence-type=predicted peptide transcript=Glyma.17g115300.2 locus=Glyma.17g115300 ID=Glyma.17g115300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKMSWTVADAVDYKGFPADRSKTGGWVPAALILGIEIVERLSTMGIAVNLVTYMISIMHLPSSTAANTVTDFMGTSFLLCLLGGFLADSFLGRYKTIGIFASIQTLGTATLAISTKLPGLRPPPCHANSDSCKQANGFQMGILYLSLYLIALGTGGLKSSVSGFGSDQFDEKDEKEKSQMAYFFNRFFFFISFGTLAAVTVLVYLQDEVSRSLAYGICSVSMIIAIIVFLSGTKRYRYKRSLGSPIVHIFQVIAASIKKRKMQLPYNVGSLYEDTPEASRIEHTEQFRFLEKAAIVAEDDFETNLCGSGPNPWKLCSLTRVEEVKMMVRLLPVWATTIIFWTIYAQLITFSVEQASTMERNIGSFQIPAGSVTVFFVAAILITLAVYDRLIMPLWKKWNGKPGFTDLQRIAIGLVFSIFGMAAASVCERKRLSVAKSVSGGNQATTTLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITRSPKGMKTMSTGLFLTTLSLGFFFSSFLVSVVKKVTGTRDGQGWLADSINKGRLDLFYALLTILSFVNFAAFAVCAVWFKPKKPKQPAAMQMGPVNGSTAEEKC*







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