Report for Sequence Feature Glyma.17g113400
Feature Type: gene_model
Chromosome: Gm17
Start: 8967967
stop: 8972096
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.17g113400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G26580.1 AT
plant-specific transcription factor YABBY family protein
JGI N/A IEA
GO:0007275 GO-bp
multicellular organism development
EnsemblGenomes N/A IEA
PF04690 PFAM
YABBY protein
JGI N/A IEA
Expression Patterns of Glyma.17g113400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.17g113400
Paralog Evidence Comments
Glyma.13g157800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.17g113400 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma17g12200 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.17g113400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.17g113400.2 sequence-type=transcript locus=Glyma.17g113400 ID=Glyma.17g113400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGATTTTCAGCTCTTGCATGCTACCTAATTGATATGATATGTTGCTTGTTTTCAAATGTCAAACTAATGTACAGCACCACACACACACACACTTGGTTGTTTTCTTCTTTTGCCTCTTTGTTTTCTTTCACCTGTTTACATCCAAGGATAAAAGAATTCAATCAGATCCTGAAAAGGAAGCTACGCtgtgtgtgtgtgtgtgtgtttgCGCTTTTGTGAACCAGTGGGTGTGTTATTTTAATTCTCTCTTTCTGGGTTCCTAGTTTTTGTTACAGTCATGTCTCCATCTCTGGACttttttttctttttttcctttttttctccttcttttGCAGTCAAAGAAAAGTCATACCCTGGAGGACCTCAAGATGGTTacacacacacacacaaacacatacacacGGTGTTTTCCCTTTCTCGTTTGAGCAAGTTCGGTTGAGGCTAATTGTGCCAACTGTCCTGGCTAGCTGTTTTGAGAAATATGATGGTTTCCTCTTGAAAACGCCAAAATAGGCACTATATGTTAAAAGTGTTGATAGGACTAGTCCTCTCCACCCTTTGAAATCCCATCTCTAAGTTGTAACCTAATTTAACTTCAGCTTCTGCACTATACATCCAGGTCCTTTCTCAAGTTTGTAAAAAGGAAAAACGAAAATGTAAATCTACTCAGAATTCCCAGTTCTAACACACATAAGGAAGAAACCCTTGATGGTGAGTGTTCCATGCAGTAGCCTGTTTGACATTGTGACCGTTCGATGTGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCTGGGCAGTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCGAAATGCAACAATAGGATTGCAATGCGTGCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAAAACTGGGCTCATTTTCCCCATATTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAATGTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGGCTATCTTCATCATATCACAGGACTTGATCATGAGTTTCATTTGAGTCTGTCAAGTAAACAATGTCCTGACCTATAATGAGTTTTAAGGACAATCATCTCATTTTCTTCGTTAGTGTACTTGTTACTACTTACTACTTGTTCAATGGATGTTTTCACTTAATTTGAAGCAAGAATGCTAGTTTTCCTTGTTATCTTACAATAAGTTCTATCTTCTACCTGATTGAGATCAAGATAAAACATGTATGCT
Coding sequences of Glyma.17g113400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.17g113400.1 sequence-type=CDS polypeptide=Glyma.17g113400.1.p locus=Glyma.17g113400 ID=Glyma.17g113400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGAGCTGCAGCATCGATGTTGCGCCTGAGCAACTCTGCTACATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCCTGTTTGACATTGTGACCGTTCGATGTGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCTGGGCAGTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCGAAATGCAACAATAGGATTGCAATGCGTGCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAAAACTGGGCTCATTTTCCCCATATTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAATGTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGA
>Glyma.17g113400.2 sequence-type=CDS polypeptide=Glyma.17g113400.2.p locus=Glyma.17g113400 ID=Glyma.17g113400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAGTGTTCCATGCAGTAGCCTGTTTGACATTGTGACCGTTCGATGTGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCTGGGCAGTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCGAAATGCAACAATAGGATTGCAATGCGTGCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAAAACTGGGCTCATTTTCCCCATATTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAATGTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGA
Predicted protein sequences of Glyma.17g113400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.17g113400.1.p sequence-type=predicted peptide transcript=Glyma.17g113400.1 locus=Glyma.17g113400 ID=Glyma.17g113400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSCSIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGQCNPEYRIDTGSTSKCNNRIAMRAPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMDNVSEKHLMPRAALLNK*
>Glyma.17g113400.2.p sequence-type=predicted peptide transcript=Glyma.17g113400.2 locus=Glyma.17g113400 ID=Glyma.17g113400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGQCNPEYRIDTGSTSKCNNRIAMRAPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMDNVSEKHLMPRAALLNK*