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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G52580.1 | AT | RabGAP/TBC domain-containing protein | JGI | N/A | IEA |
| GO:0006886 | GO-bp | intracellular protein transport | EnsemblGenomes | N/A | IEA |
| GO:0031338 | GO-bp | regulation of vesicle fusion | EnsemblGenomes | N/A | IEA |
| GO:0090630 | GO-bp | activation of GTPase activity | EnsemblGenomes | N/A | IEA |
| GO:0005622 | GO-cc | intracellular | EnsemblGenomes | N/A | IEA |
| GO:0012505 | GO-cc | endomembrane system | EnsemblGenomes | N/A | IEA |
| GO:0005096 | GO-mf | GTPase activator activity | EnsemblGenomes | N/A | IEA |
| GO:0017137 | GO-mf | Rab GTPase binding | EnsemblGenomes | N/A | IEA |
| KOG2197 | KOG | Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins | JGI | N/A | IEA |
| PTHR22957 | Panther | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN | JGI | N/A | IEA |
| PTHR22957:SF34 | Panther | PROTEIN TBC-15 | JGI | N/A | IEA |
| PF00566 | PFAM | Rab-GTPase-TBC domain | JGI | N/A | IEA |
| PF12068 | PFAM | Domain of unknown function (DUF3548) | JGI | N/A | IEA |
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Glyma.17g112200 not represented in the dataset |
Glyma.17g112200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g159100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g12070 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g112200.1 sequence-type=CDS polypeptide=Glyma.17g112200.1.p locus=Glyma.17g112200 ID=Glyma.17g112200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCTAGAATCGGAGCTTCACGATTTATCCGATGACGCCGATTACGCCGCGTCGCAGCAACAAGGATCTGCTAGCGTGATGTTGCGGAGTGACAGTGCCAAACAGAGTTCCCCTCGGAACGGTGCTGAAATTGTATTTTCGAAGGACAATGTTGCAATTCATCCGACTCAATTTGCGTCTGAAAGAATCAGTGGAAGACTGAAATTGATTAAGCAAAGTTCGTCCTTGTTTATGACTTGGATACCTTACAAAGCGCATAGCTCAGAGGCCAGGCTGTCTGATAAAGACAGAAACCTTTATACCATAAGGGCGGTGCCCTTCACTGACATCAGGTCCATCCGGAGGCATAATCCTGCTCTTGGGTGGCAATATGTCATTGTTGTTCTATCATCAGGACCTTCTTATCCTCCATTATATTTTTATAGTGGAGGAGTCAAAGAATTCCTTGCTACAATAAAGCAACATGTTCTTCTTGTGAGATCTGAAGAAGATGCCAACGTATTCCTTGTGAATGATTTTCAGAATACACTGCAGAGGACTTTGTCTTCCTTGGAGATGCCCAGGGCTGTTCCCCTTGCATGTGGACCTTCAAATACATCAGTTGATGAATCCATTTTGATTGAGAACCAAGAAAGAGCTGATAATGGTGCCAATGATGGAAGATTTAGTGTTAATCAGTTCCATGGGAGACCAAGACATAAAGTAGATCCTGCTCGAGACCTCTCTATTCAAGTTCTAGAGAAGTTTTCTCTTGTCACAAGATTTGCCCGTGAAACAACTTCACAACTTTTTGGAGAAAACCAGAGTAATGGATTTAGTCCCATTGACAGGAGGACCCATATCCAGACTAACCTTGATCATCCTAAGTCTTCCAATGTTGAGGAAAATACCTCTGTTGAAAGTCCTGTTGTCTTGGATTCTCAGGAGTTCGATAATTTATCGTTAGTATGGGGAAAACCAAGGCAACCCCCTTTGGGTTCTGAAGAGTGGAATGCCTTCTTGGATTCTGAAGGACGAGTCACAGATTCAGAAGCTTTGAGAAAGAGAGTATTTTATGGTGGACTTGACCACGAATTACAAAATGAGGTATGGGGTTTGCTTTTGGGATATTATCCATATGAATCAACATATGCTGAGAGAGAATTCCTGAAGTCAGTTAAGAAGTTAGAATACGAGAACATAAAGAACCAGTGGCAGAGTATATCCTCAGCACAGGCTAAAAGATTCACAAAATTCAGGGAAAGGAAAGGGCTTATTGAGAAAGATGTGGTGAGAACTGATAGATCACTCGCTTTCTATGAAGGCGATGATAATCCAAATGTAAATGTTCTGCGAGATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAGGGAATGAGTGATCTTCTATCTCCAATATTGTTTGTGATGGATAATGAATCAGAGGCATTTTGGTGTTTTGTTGCTCTAATGGAACGTCTCGGACCCAATTTTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAGTTGGTGGAGCTGCTGGATAGTCCATTGCATAACTATTTTAAGCAGCGTGACTGCTTGAATTATTTCTTCTGTTTCCGCTGGATTTTGATTCAATTTAAAAGGGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAAGTTTTATGGACACATTATCCGTCTGAGCATTTGCACCTGTATGTATGTGTGGCAATCTTGAAACGATATCGTGGTAAAATAATTGGAGAGCAAATGGACTTCGACACCCTTTTGAAGTTTATTAATGAGTTAAGTGGTCACATCGATCTTGATGCAACCCTCAGAGATGCAGAGGCTCTATGTATATGTGCCGGTGAGAACGGTGCTGCTCGTATACCCCCTGGAACCCCACCGTCGTTGCCTCATGAAGATGGTTCTTTTTACGCCCAACAAGAACAAGATGAAATATTGTAA
>Glyma.17g112200.1.p sequence-type=predicted peptide transcript=Glyma.17g112200.1 locus=Glyma.17g112200 ID=Glyma.17g112200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLESELHDLSDDADYAASQQQGSASVMLRSDSAKQSSPRNGAEIVFSKDNVAIHPTQFASERISGRLKLIKQSSSLFMTWIPYKAHSSEARLSDKDRNLYTIRAVPFTDIRSIRRHNPALGWQYVIVVLSSGPSYPPLYFYSGGVKEFLATIKQHVLLVRSEEDANVFLVNDFQNTLQRTLSSLEMPRAVPLACGPSNTSVDESILIENQERADNGANDGRFSVNQFHGRPRHKVDPARDLSIQVLEKFSLVTRFARETTSQLFGENQSNGFSPIDRRTHIQTNLDHPKSSNVEENTSVESPVVLDSQEFDNLSLVWGKPRQPPLGSEEWNAFLDSEGRVTDSEALRKRVFYGGLDHELQNEVWGLLLGYYPYESTYAEREFLKSVKKLEYENIKNQWQSISSAQAKRFTKFRERKGLIEKDVVRTDRSLAFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMDNESEAFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWILIQFKREFEYEKTMRLWEVLWTHYPSEHLHLYVCVAILKRYRGKIIGEQMDFDTLLKFINELSGHIDLDATLRDAEALCICAGENGAARIPPGTPPSLPHEDGSFYAQQEQDEIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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