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Report for Sequence Feature Glyma.17g107900

Feature Type:gene_model
Chromosome:Gm17
Start:8471338
stop:8473573
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g107900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01980.1AT NAD(P)-binding Rossmann-fold superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
KOG0725 KOG Reductases with broad range of substrate specificities JGI N/AIEA
PTHR24322Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24322:SF58Panther CARBONYL REDUCTASE 1-RELATED JGI N/AIEA
PF00106PFAM short chain dehydrogenase JGI N/AIEA
LARABITOLUTIL-PWYSoyCyc9 xylitol degradation Plant Metabolic Network ISS
GN7V-66351SoyCyc9-rxn D-xylulose reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g107900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g107900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g11640 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g107900
>Glyma.17g107900.1 sequence-type=CDS polypeptide=Glyma.17g107900.1.p locus=Glyma.17g107900 ID=Glyma.17g107900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAGTCAGGGAAGAGAGTGTTGCTTACCTCCAACGGCGACGACATTTCTCAAGGCATTGCCTTCCATTTGGTGAAGCAAGGGTGCAGGTTGGTTTTGCTGGGAGATCAGAATTCCCTGCGGAGCATCGCGAACAAAATCATGGATTCCCTCTCCCTCGCAGACAGAGGCACCGTGCAGGTCGTTGGATTGGACATGGAGGATCAAAGCGAATCGACTTTCCATCATTCCGTGGATAAAGCGTGCCAGATTTTGGGGAAATTGGATGCGTTTGTCAACTGCTACGCTTACGAAGGAAAAATGCAAGATCATCTTGAGTTAGCTGAGAGTGAGTTCAAGAAAATAGTGAAGATTAATTTTATGGCTGCGTGGTTTCTATTAAAAGCTGTTGGGCGAAAGATGCGGGAGTTCAACACCGGGGGCTCCATCGTCTTTTTAACCTCCATAGTTGGTGCTGAAAGGGGGCTTTATCCAGGTGCTGCTGCATATGCCTCTGCCTTGGCTGGAGTGCAGCAGTTAGTTAGGGCTTCGGCTTTGGAGATAGGGAAGTACCAGGTCAGAGTTAATGCAATTTCTCGTGGCCTGCACCTGCATGATGAATTCCCATTATCCGTGGGAAAGGAAAGGGCAGAAAAATTTGTGAAGGATGCAGCACCACTTGAGAGATGGCTTGATGTTAAGAATGATCTGGCTTCTACAGTCATCTACCTAATCAGTGATGGATCACGCTACATGACTGGAACAACCATATATGTTGATGGGGCACAGTCTATAACCAGGCCTCGGATGCGATCCTTTATGTGA
Predicted protein sequences of Glyma.17g107900
>Glyma.17g107900.1.p sequence-type=predicted peptide transcript=Glyma.17g107900.1 locus=Glyma.17g107900 ID=Glyma.17g107900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKSGKRVLLTSNGDDISQGIAFHLVKQGCRLVLLGDQNSLRSIANKIMDSLSLADRGTVQVVGLDMEDQSESTFHHSVDKACQILGKLDAFVNCYAYEGKMQDHLELAESEFKKIVKINFMAAWFLLKAVGRKMREFNTGGSIVFLTSIVGAERGLYPGAAAYASALAGVQQLVRASALEIGKYQVRVNAISRGLHLHDEFPLSVGKERAEKFVKDAAPLERWLDVKNDLASTVIYLISDGSRYMTGTTIYVDGAQSITRPRMRSFM*






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