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Report for Sequence Feature Glyma.17g104100

Feature Type:gene_model
Chromosome:Gm17
Start:8160933
stop:8182929
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g104100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20320.1AT dicer-like 4 JGI N/AIEA
GO:0006396GO-bp RNA processing EnsemblGenomesN/AIEA
GO:0006396GO-bp RNA processing JGI N/AIEA
GO:0030422GO-bp production of siRNA involved in RNA interference EnsemblGenomesN/AIEA
GO:0031047GO-bp gene silencing by RNA EnsemblGenomesN/AIEA
GO:0090501GO-bp RNA phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0090502GO-bp RNA phosphodiester bond hydrolysis, endonucleolytic EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0016442GO-cc RISC complex EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0004386GO-mf helicase activity JGI N/AIEA
GO:0004525GO-mf ribonuclease III activity EnsemblGenomesN/AIEA
GO:0004525GO-mf ribonuclease III activity JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008026GO-mf ATP-dependent helicase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
GO:0016891GO-mf endoribonuclease activity, producing 5'-phosphomonoesters EnsemblGenomesN/AIEA
GO:0016891GO-mf endoribonuclease activity, producing 5'-phosphomonoesters JGI N/AIEA
KOG0701 KOG dsRNA-specific nuclease Dicer and related ribonucleases JGI N/AIEA
PTHR14950Panther HELICASE-RELATED JGI N/AIEA
PTHR14950:SF13Panther JGI N/AIEA
PF00035PFAM Double-stranded RNA binding motif JGI N/AIEA
PF00270PFAM DEAD/DEAH box helicase JGI N/AIEA
PF00271PFAM Helicase conserved C-terminal domain JGI N/AIEA
PF00636PFAM Ribonuclease III domain JGI N/AIEA
PF02170PFAM PAZ domain JGI N/AIEA
PF03368PFAM Dicer dimerisation domain JGI N/AIEA

Expression Patterns of Glyma.17g104100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g104100 not represented in the dataset
Glyma.17g104100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g104100
ParalogEvidenceComments
Glyma.13g156500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g104100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g11235 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g104100
>Glyma.17g104100.1 sequence-type=CDS polypeptide=Glyma.17g104100.1.p locus=Glyma.17g104100 ID=Glyma.17g104100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGGACGGAGAATCCTCCGTCGTCGTCGCCGGCGGCCAAGCTTCCATGGAACCCTCCTTAAGCGTCTCCAATCAACTGCAGTCCCTGAGTCTTTCCCAAGACAAAAACCATGATGACTCAGTCAAGAAAGATCCCCGGAAAATTGCAAGAAAGTATCAGTTGGAGTTATGCAAAAAAGCTATGGAGGAAAATATAATTGTGTATTTAGGGACAGGGTGTGGGAAGACCCACATTGCTGTGCTTCTTATGTATGGGATGGGTCATTTGATTCGGAAACCGCAGAAGAACATATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTCCATCAGCAAGCAAAGGTTATAGCAGACTCTACTAATTTTAAGGTTGGGACATACTGTGGAAGTTCCAAGCGCTTGAAACGTCATCAAGACTGGGAGCAGGAGATTGGACAATATGAGGTTCTTGTTATGACCCCACAAATATTACTTCATAACTTATCTCATTGCTTCATCACAATGGAGATGATTGCACTTTTGATATTTGATGAATGCCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTTATCATGAAAGTCTTCTACAAAAGTAATTCCTCAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCTGTTGTAGGAAAAGGTGCTTCTAGTGAAGCAAATCTAGCAAAAAGCATCAATAGTCTTGAACATATACTTGATGCTAAGGTATACTCTGTTGAAGACAAGGAATTGCAATCTTTTGTGACCACTCCTGTGATTAATATATATCATTATGTTTCAACTGCAAGTGGGGAAACTAGCTTGTACCTGAAAATTGAGGAGATTAAACGCCAGTGCATAGCAAACCTTGGTAGGAGTATAGAAGATCACCAGAAAAGGATGAATGCAAAGAAACTTCTGAACCGGATGCATGATAATGTGATTTTCGGTCTGCAGAATCTTGGCATTTGGGGAGCATTGCAAGCTAGTCATATTCTTCTGAGTGGTGATCGTTCTGAGAGGCATGAGTTAGTGGAGGCTGAAGGAAATTCAAGTGATGACTCTCTGTGTGATAAATATCTTGCTCAGGCTGCTGAACTGTTTACTTCACAATGCATGATAGGCGACAGGGTAACTGATTTATCTTCTGTGGAAATATTAAAAGAGCCATTTTTCTCAGCAAAGCTTTTACGACTCATTGGGATATTATCCAACTTTAGGTTGCAAAAGAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACAGCAAGATCCCTGTCATACATTCTACAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTTCCTAGTAGGAGTCCATGCTGGACTGAAGAGTATGTCACGAAAGACCATGAACATCATTGTTGATAAGTTTCGCTCTGGAGAGTTGAATCTACTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACGTGTTGCCTCGTCATACGATTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGTCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGCAATAAGAAGGAACTTGACATAATTGATGGCTTTGAGAAAGATGAATACCGAATGAATATGGAAATTACTTTTCGAACATCCAAGGAGACATACATAATCCCTGAGGAAAGAATATTCAGAGTTGATTCGTCTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTACTTTGACCCCAAGCCATGTTTTTATTACTTAGATGATTCAGGGGGGATTTCCTGCCATATAACATTGCCTTCCAATGCACCAATAAACCAAATTTTAGGTACACCACAGTTGTCTATGGAGGCTTCCAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTGTATAATTTAGGCACTTTAAGTGATTGTCTCTTGCCAAAACAAGATGATGCAGAGCCAGAGGCGCAGGTTTCAGGCTCTTCTGATGAAGATGAATGTGAAGATGCCATATCAAGAGGAGAATTACATGAGATGCTAGTTCCTTCTGCCTTTGGACAGTCATGGATAAATGAGGATAACATCGTCCGTCTCAACTCTTACTACATAAAATTTTGTCCCTATCCAGAGGATAGGGTCTACAAAGAGTTTGGTCTTTTCATCATGGTTCGGCTTCCAATGGAGGCTGAGAAATTGGAACTTGATCTCCATCTTGCTCATGGTCGATCTGTGATGACAAAATTTGTCCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTTGATAGATTAGAATTCGTTTCTGAGTTTGTAGACTTGGGTATGGGTGCTGAATCTCACACAGGCACATCAACCTTCTACCTTTTGCTTCCAGTTGTATTGCAAGAATATGGAAATGCCATGAAAGTAGACTGGAAGACTGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGCTGATACTATGGATAAAAAAGTTTTCCCTTTAGATATTCACCTGCAACTTGCCAATGGTTACAGAAGTGTAAGAGATGTCGAGAATAGTTTAGTGTATGCCCCACATAAGAAGAACTTTTATTTTGTCACGAATGTTAACTACCAAAAGAATGGATATAGTCCTCATAATGATTCAGGCACTTCAAGCTATGTGGATTACTTCATTGAAAAGTTTTCCATTCACCTCAAATGTCCAGAACAACCACTTCTACATGTTAAACCAGTCTCCAATTTGCACAACCTGCTACACAACCGAAAGCATGAGGATGCAGAACCACAGGAGCTGGACGAATACTTAATTTATTTGCCTCCTGAGCTTTGTGAACTAAAAATAATAGGTTTTTCGAAGGATATTGGCAGTTCCATATCTTTGCTACCTTCAATTATGCACCGTCTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCACAGGCTATCTTCTTCCTTTCCAGAGGCAGCTGAAATTAGTGCCCTTAGAGTTTTAGAAGCTCTCACTACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTTCTTAAATTTGCTGTTGCACGTCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTTACAAAAAGGCGCTCCAACGCTGTGAATAATTCCAATCTGTTTAAGTTGGCTATCAAGCGCAATTTGCAGGTCTATATATGCGATCAGACATTTGATCCCACTCAGTTTTATGCATTAGGCCGTCCTTGCCCAAGACTTTGTAGCAATGAAACCAAAGAAAGCATACACTTCTGTTTAAATTCTGTTAAGGAACAAGGAAAAGTAACTGAAACCCAATGTAACAAAAATCATCATTGGTTACATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTTGGAGCATTTCTAGTTGACAGTGGCTTTAAAGCTGCAATTGCTTTTCTTTCATGGATTGGCATTCAAGTTGATTTTGAAGCTTCACAAGTGGTTGATATTTGCATAGCAAGTGCTAGTTATTTACCTCTTTCTTCTGAAGTAGACATTCCTTCTCTTGAAGGTAAGCTAGGACATCACTTTTTTCATAAGGGCCTGCTTCTCCAGGCATTTGTACATCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATATGTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAACAAGGCATTTGCTTGTCTAGCGGTAGATCGCAGTTTTGATAAATTTCTTTTATGTGATTCAAGTGGCCTGTCTGAGGCAATAAAAAAGTATGTTGACTACATTAGAAGACCTGTATCAGATAACAGCATTAAAGAAGGGCCAAAATGTCCCAAGGCACTGGGTGACTTAGTGGAATCTTGTGTTGGTGCCATCCTTCTTGATTCAGGGTTCAATTTGAACAAAGTTTGGAAGATTATGACTTCGTTCTTGGACTCAATCATGAAATTCTCATCAAGCTTGCAGCTCAGTCCTGTTAGGGATTTGCGAGAACTTTGCCAATCTCATAATATGGAGTTGGAGTTTCTGCCAGTGCCCTCAAAATTGACTAAAAGGTTTTCAGTTGAAGCTAAAGTGAGTGGGAATGGTGTATGTGAAACAGCTTCAGCAACTGGTCAAAATAAAAAAGAGGCTTGCAGAATTGCTTCACTGCTACTTTTTTCAAAGTTCAAGGCTCAAGGCTGGAAAGCAAAGTCAAAAACTTTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAGACTCCCATTGATGTAACAGATACCAATAAACACATAGTGGTTAATGCAGACCCATACAACAAGTCTAACCCAGAAATTCGCCCTATGCAAGAGACAGATGAAATATGCTCTCCATGTGTGAAACCTTTCGGCCAACGGCTTCAATCTTCTGCTAAGGGAAAGCTTAGTCAAATATTTGAAAATCGTGATTGCAGCAGTGACTTGTCAGGGACAGGAACGGCAAGATCACGATTGTATGAATTATGTGCTTCTTATTGTTGGAAACCTCCTTCATTTGAATGCTGCAAGGCAGAGGGACCTGACCACCTGAAACAATTCACTTGCAAGGTGACCTTAGAGATAGAAGAGGCCCAGAATTTGATTTTAGAGTTTGTTGGGGAACCTCTTTCAAAGAAGAAAGATGCAGCAGAGAGTGCGGCAGAGGGTGCATTTTGGTATCTACAACATGAAGGTTACTTGCCTAGTAGTGGTAATTGA
Predicted protein sequences of Glyma.17g104100
>Glyma.17g104100.1.p sequence-type=predicted peptide transcript=Glyma.17g104100.1 locus=Glyma.17g104100 ID=Glyma.17g104100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPDGESSVVVAGGQASMEPSLSVSNQLQSLSLSQDKNHDDSVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMYGMGHLIRKPQKNICVFLAPTVALVHQQAKVIADSTNFKVGTYCGSSKRLKRHQDWEQEIGQYEVLVMTPQILLHNLSHCFITMEMIALLIFDECHHAQVKSNHAYAVIMKVFYKSNSSKVPRIFGMTASPVVGKGASSEANLAKSINSLEHILDAKVYSVEDKELQSFVTTPVINIYHYVSTASGETSLYLKIEEIKRQCIANLGRSIEDHQKRMNAKKLLNRMHDNVIFGLQNLGIWGALQASHILLSGDRSERHELVEAEGNSSDDSLCDKYLAQAAELFTSQCMIGDRVTDLSSVEILKEPFFSAKLLRLIGILSNFRLQKNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDFLVGVHAGLKSMSRKTMNIIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDIIDGFEKDEYRMNMEITFRTSKETYIIPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPCFYYLDDSGGISCHITLPSNAPINQILGTPQLSMEASKRDACLKAIEELYNLGTLSDCLLPKQDDAEPEAQVSGSSDEDECEDAISRGELHEMLVPSAFGQSWINEDNIVRLNSYYIKFCPYPEDRVYKEFGLFIMVRLPMEAEKLELDLHLAHGRSVMTKFVPFGVVEFDKDEIKMAENFQEMFLKIILDRLEFVSEFVDLGMGAESHTGTSTFYLLLPVVLQEYGNAMKVDWKTVKRCLCSPIFRHPADTMDKKVFPLDIHLQLANGYRSVRDVENSLVYAPHKKNFYFVTNVNYQKNGYSPHNDSGTSSYVDYFIEKFSIHLKCPEQPLLHVKPVSNLHNLLHNRKHEDAEPQELDEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKHRLSSSFPEAAEISALRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNSNLFKLAIKRNLQVYICDQTFDPTQFYALGRPCPRLCSNETKESIHFCLNSVKEQGKVTETQCNKNHHWLHRKTIADVVEALVGAFLVDSGFKAAIAFLSWIGIQVDFEASQVVDICIASASYLPLSSEVDIPSLEGKLGHHFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLITSYVFSAYPKLKPGQLTDLRSLSVNNKAFACLAVDRSFDKFLLCDSSGLSEAIKKYVDYIRRPVSDNSIKEGPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDSIMKFSSSLQLSPVRDLRELCQSHNMELEFLPVPSKLTKRFSVEAKVSGNGVCETASATGQNKKEACRIASLLLFSKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTDTNKHIVVNADPYNKSNPEIRPMQETDEICSPCVKPFGQRLQSSAKGKLSQIFENRDCSSDLSGTGTARSRLYELCASYCWKPPSFECCKAEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKKKDAAESAAEGAFWYLQHEGYLPSSGN*






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