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Report for Sequence Feature Glyma.17g102000

Feature Type:gene_model
Chromosome:Gm17
Start:8007473
stop:8011713
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g102000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61620.1AT 3'-5'-exoribonuclease family protein JGI N/AIEA
GO:0016075GO-bp rRNA catabolic process EnsemblGenomesN/AIEA
GO:0031125GO-bp rRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0034427GO-bp nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' EnsemblGenomesN/AIEA
GO:0034475GO-bp U4 snRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0071028GO-bp nuclear mRNA surveillance EnsemblGenomesN/AIEA
GO:0071051GO-bp polyadenylation-dependent snoRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0000176GO-cc nuclear exosome (RNase complex) EnsemblGenomesN/AIEA
GO:0000177GO-cc cytoplasmic exosome (RNase complex) EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
KOG1068 KOG Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases JGI N/AIEA
PTHR11953Panther RIBONUCLEASE PH RELATED JGI N/AIEA
PF01138PFAM 3' exoribonuclease family, domain 1 JGI N/AIEA
PF03725PFAM 3' exoribonuclease family, domain 2 JGI N/AIEA

Expression Patterns of Glyma.17g102000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g102000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g11020 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g102000
>Glyma.17g102000.2 sequence-type=transcript locus=Glyma.17g102000 ID=Glyma.17g102000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTTTTTGCCGCAAAACGCAGCCGCGACAGCAAACCCGCACTGCACCAATAATTCTCGTCGCACCTGCACCCTGCGAATATTGACTACTCAGTAGCTCTTGCTGCCATAGAGGATGGAATACGTCAGCCCAGAAGGACTTCGCTTGGATGGTCGCCGACCAATGGAGATGCGACAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGGTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGCCCTAGAGAGGTGCAAAATAGGAATCAACAAATAAGTAGCCATGCTCTGGTTCGGTGTGAGTACAGCATGGCTAATTTTAGCACTGGAGATCGCATGAGGAAACCTAAGGGCGACAGGAGATCAACTGAAATTTCTCTGGTTATTCGACAAACTATGGAAGCTTGTATACTGACACATTTATTGCCTCGTTCCCAGATAGATATTTATGTCCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCTTGTATAAATGCTGCAACTTTGGCCCTTGCCGATGCTGGGATTCCTATGCGTGATCTTGTAACTTCCTGTAGTGCTGGATACCTTAATAGCACCCCTCTGCTTGATTTGAACTATGTAGAAGACAGTGCTGGAGGTCCTGATGTAACTCTAGGAATTCTTCCGAAGCTGGATAAAGTGACACTTCTTCAGATGGATTCTAAACTACCAATTGACATTTTGGAAAATGTTATGCAACTGGCAATTGAAGGCTGCAAAGCAATAGCTAACTATATTCGAGAAGTTTTACTGGAGAACACAAAGCAACTTGAGTATCGACGAGGTGTATAATTTTAGAGCAGAAGTAATATTTCCTATTTGCATCATGACGCGATGATTATTATTGTCGTTGGTCTTGTTTTTCCAGATTTATAGGTTCATTCTTTCAGCATTTGTGCATTTCTCATTTTGGATTAGAATTCTCCTGTATTTACCTGTAAACAATTTTGTTTTTTGCATACGGTGTTGACTAAAGGGAAGTGAGGGGAGAGGTTCTAACTTTGTGCATGTTTGAATTTCACTTGTGAGAGAGTTTAAAAGTTTTTTTCCTCCC
Coding sequences of Glyma.17g102000
>Glyma.17g102000.1 sequence-type=CDS polypeptide=Glyma.17g102000.1.p locus=Glyma.17g102000 ID=Glyma.17g102000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATACGTCAGCCCAGAAGGACTTCGCTTGGATGGTCGCCGACCAATGGAGATGCGACAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGGTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGCCCTAGAGAGGTGCAAAATAGGAATCAACAAATAAGTAGCCATGCTCTGGTTCGGTGTGAGTACAGCATGGCTAATTTTAGCACTGGAGATCGCATGAGGAAACCTAAGGGCGACAGGAGATCAACTGAAATTTCTCTGGTTATTCGACAAACTATGGAAGCTTGTATACTGACACATTTATTGCCTCGTTCCCAGATAGATATTTATGTCCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCTTGTATAAATGCTGCAACTTTGGCCCTTGCCGATGCTGGGATTCCTATGCGTGATCTTGTAACTTCCTGTAGTGCTGGATACCTTAATAGCACCCCTCTGCTTGATTTGAACTATGTAGAAGACAGTGCTGGAGGTCCTGATGTAACTCTAGGAATTCTTCCGAAGCTGGATAAAGTGACACTTCTTCAGATGGATTCTAAACTACCAATTGACATTTTGGAAAATGTTATGCAACTGGCAATTGAAGGCTGCAAAGCAATAGCTAACTATATTCGAGAAGTTTTACTGGAGAACACAAAGCAACTTGAGTATCGACGAGGTGTATAA

>Glyma.17g102000.2 sequence-type=CDS polypeptide=Glyma.17g102000.2.p locus=Glyma.17g102000 ID=Glyma.17g102000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATACGTCAGCCCAGAAGGACTTCGCTTGGATGGTCGCCGACCAATGGAGATGCGACAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGGTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGCCCTAGAGAGGTGCAAAATAGGAATCAACAAATAAGTAGCCATGCTCTGGTTCGGTGTGAGTACAGCATGGCTAATTTTAGCACTGGAGATCGCATGAGGAAACCTAAGGGCGACAGGAGATCAACTGAAATTTCTCTGGTTATTCGACAAACTATGGAAGCTTGTATACTGACACATTTATTGCCTCGTTCCCAGATAGATATTTATGTCCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCTTGTATAAATGCTGCAACTTTGGCCCTTGCCGATGCTGGGATTCCTATGCGTGATCTTGTAACTTCCTGTAGTGCTGGATACCTTAATAGCACCCCTCTGCTTGATTTGAACTATGTAGAAGACAGTGCTGGAGGTCCTGATGTAACTCTAGGAATTCTTCCGAAGCTGGATAAAGTGACACTTCTTCAGATGGATTCTAAACTACCAATTGACATTTTGGAAAATGTTATGCAACTGGCAATTGAAGGCTGCAAAGCAATAGCTAACTATATTCGAGAAGTTTTACTGGAGAACACAAAGCAACTTGAGTATCGACGAGGTGTATAA
Predicted protein sequences of Glyma.17g102000
>Glyma.17g102000.1.p sequence-type=predicted peptide transcript=Glyma.17g102000.1 locus=Glyma.17g102000 ID=Glyma.17g102000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREVLLENTKQLEYRRGV*

>Glyma.17g102000.2.p sequence-type=predicted peptide transcript=Glyma.17g102000.2 locus=Glyma.17g102000 ID=Glyma.17g102000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREVLLENTKQLEYRRGV*






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