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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G03220.1 | AT | fucosyltransferase 1 | JGI | N/A | IEA |
GO:0009832 | GO-bp | plant-type cell wall biogenesis | EnsemblGenomes | N/A | IEA |
GO:0009969 | GO-bp | xyloglucan biosynthetic process | EnsemblGenomes | N/A | IEA |
GO:0036065 | GO-bp | fucosylation | EnsemblGenomes | N/A | IEA |
GO:0042546 | GO-bp | cell wall biogenesis | EnsemblGenomes | N/A | IEA |
GO:0042546 | GO-bp | cell wall biogenesis | JGI | N/A | IEA |
GO:0005794 | GO-cc | Golgi apparatus | EnsemblGenomes | N/A | IEA |
GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
GO:0016020 | GO-cc | membrane | JGI | N/A | IEA |
GO:0008107 | GO-mf | galactoside 2-alpha-L-fucosyltransferase activity | EnsemblGenomes | N/A | IEA |
GO:0008107 | GO-mf | galactoside 2-alpha-L-fucosyltransferase activity | JGI | N/A | IEA |
GO:0008417 | GO-mf | fucosyltransferase activity | EnsemblGenomes | N/A | IEA |
PF03254 | PFAM | Xyloglucan fucosyltransferase | JGI | N/A | IEA |
GN7V-52181 | SoyCyc9-rxn | type 1 precursor disaccharide 2-α-L-fucosyltransferase | Plant Metabolic Network | ISS |
Glyma.17g101600 not represented in the dataset |
Glyma.17g101600 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.05g025400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma17g10980 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g101600.1 sequence-type=CDS polypeptide=Glyma.17g101600.1.p locus=Glyma.17g101600 ID=Glyma.17g101600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGCTTCTTCGTCGCTTCCTTCGTCCTCTGCTCTGTGATTTTCTCAGTCTCCATTGTTCTTCGAGACCCTCCCTCAGATGCCGCCCTGCACGAACCCTCATCACTCACACCCCTCTTGCAAATCGCACAAACTCTACAAGATTTTGTCAATGAAACCTCTGATTCTGTTGAGCTGCAACAAGATAAACTGCTTGGTGGCCTTCTAGCTGATGGATTTGATGATGAAGAAACTTGTCTCAGCAGGTATCAGTCTGCCATGTATTATCACAAAGGGCTATCAGAAAAGCCTTCTTCGTACCTCATTTCTAGGTCTGGTGCTCAATTTACTGAGTCCTCAGAGTGTAAATATGTTCTGTGGATTTCATTTAGTGGATTAGGGAATAGGATTTTGACCCTAGCTTCTGCATTTCTCTATGCATTACTCACAAACCGTGTTCTAGTGGTTGACCCTGGAACGGATATGGTTGATCTCTTTTGTGAGCCATTTCCAGATTCTTCCTGGTTTCTCCCTAGTGATTTTCCTCTTAATGTTCAGTTTAATAATTTCAGTCAGAATTCTGACCAATGTTATGGGAAAATGCTGAAAAATAAAGCAGTTACTGATTCTACTGTTGCATCTTTTGTCTACCTTCATATAGCCCGTGATTATGATGACCATGATAAGCTTTTCTTCTGTGATGAAGAGCAACGTTTTCTCCGGAACATGCCGTGGTTAATGATGAAAACTGATAACTACTTTGTACCTTCTGTATTATTAATGCCATCTTTTGAGCAGGAACTGAATGATCTCTTCCCAAATAAGGAAACAGTTTTCCATTTCTTGGGTAGATATCTGCTCCACCCCACAAACAATGTGTGGGGACTTGTTGTCAGATACTATCAAGCTTATTTAGCTAAAGCTGATGAAAGAGTTGGCATACAAATTAGAGTGTTTGACACCAAACCTGGTCCGTTTCAACATAAGAAGAATATTCTGCCCGATGTTAACCATCAGGAGGATGCTACCAATTCATCAGGAATTCCCAAGTCAAAAGCGGTTTTGATGACATCCTTAAACTCTGGTTATTTTGAAAAGGTGAGAGACATTTACTGGGAATTTCCTACGGTGACGGGAGAAGCGGTTGGTGTTTACCAGCCGAGCCACGAAGGATACCAACAAACACAGAAGCAGATGCACAACCAAAAAGCTTGGGCAGAAATGTATCTGTTAAGCTTAACTGATGTGTTGGCTACTAGCTCATGGTCTACTTTTGGGTATGTGGCTCACGGGCTTGGAGGTTTAAAACTGCGGATTCTGTACAAACCTGAGAATAGAACGGTCCCAGATCCTCCCTGTCCATGTGCCATGTCAATGGAGCCATGTTTCCATGCTCCCCCCTTCTTTAACTGTAAGGCTAAGAGAGGAACTTACACAGGTGAACTTGTTCCATGTGAGGCACTGTGA
>Glyma.17g101600.1.p sequence-type=predicted peptide transcript=Glyma.17g101600.1 locus=Glyma.17g101600 ID=Glyma.17g101600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGFFVASFVLCSVIFSVSIVLRDPPSDAALHEPSSLTPLLQIAQTLQDFVNETSDSVELQQDKLLGGLLADGFDDEETCLSRYQSAMYYHKGLSEKPSSYLISRSGAQFTESSECKYVLWISFSGLGNRILTLASAFLYALLTNRVLVVDPGTDMVDLFCEPFPDSSWFLPSDFPLNVQFNNFSQNSDQCYGKMLKNKAVTDSTVASFVYLHIARDYDDHDKLFFCDEEQRFLRNMPWLMMKTDNYFVPSVLLMPSFEQELNDLFPNKETVFHFLGRYLLHPTNNVWGLVVRYYQAYLAKADERVGIQIRVFDTKPGPFQHKKNILPDVNHQEDATNSSGIPKSKAVLMTSLNSGYFEKVRDIYWEFPTVTGEAVGVYQPSHEGYQQTQKQMHNQKAWAEMYLLSLTDVLATSSWSTFGYVAHGLGGLKLRILYKPENRTVPDPPCPCAMSMEPCFHAPPFFNCKAKRGTYTGELVPCEAL*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||