SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G47800.1 | AT | Galactose mutarotase-like superfamily protein | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | JGI | N/A | IEA |
| GO:0006006 | GO-bp | glucose metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0019318 | GO-bp | hexose metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0033499 | GO-bp | galactose catabolic process via UDP-galactose | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004034 | GO-mf | aldose 1-epimerase activity | EnsemblGenomes | N/A | IEA |
| GO:0016853 | GO-mf | isomerase activity | EnsemblGenomes | N/A | IEA |
| GO:0016853 | GO-mf | isomerase activity | JGI | N/A | IEA |
| GO:0030246 | GO-mf | carbohydrate binding | EnsemblGenomes | N/A | IEA |
| KOG1604 | KOG | Predicted mutarotase | JGI | N/A | IEA |
| PTHR10091 | Panther | ALDOSE-1-EPIMERASE | JGI | N/A | IEA |
| PF01263 | PFAM | Aldose 1-epimerase | JGI | N/A | IEA |
| GN7V-45980 | SoyCyc9-rxn | aldose 1-epimerase | Plant Metabolic Network | ISS |
|
Glyma.17g098400 not represented in the dataset |
Glyma.17g098400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g028400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g10680 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g098400.1 sequence-type=CDS polypeptide=Glyma.17g098400.1.p locus=Glyma.17g098400 ID=Glyma.17g098400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTAAGGTATTCTTGTTGTTATGTTTTCTCCCTGGGCTACTCCTTGTTCAGGCACATAAACATCATAAGAAAATTGGGTTTTATGAACTGAAGAGAGGAGATCTTAGGTTGAATTTGACAAATTACGGTGCTACAATTATCTCAGTCATAACACCTGATAAACATGGGAAATTAGCCGATATTGTTCTTGGCTACGATTCCATTGATTCTTATAAGAATGATACAGTTTACTTCGGTGCCCTTATTGGACGTGTGGCAAATAGGATTAGAGGAGCTAAATTCACTTTGGATGGCAAAACCTACAAATTGCCCGCTAATGATCACGGGAACACACTTCACGGTGGCGCAAGAGGCTTCGGTGATGTTGTATGGTCTGTGGAATCCCACAAGAAACACCGTCACGTGACATTTACCTACGATAGTTTTGAAAATGAACAAGGCTTTCCTGGAAAACTTAAGGTCTCAGTGACTTACATGCTCATTGGAAGACACAAATTGGCAGTGAAAATGATAGCAAAGCCAGTGGACAAAGCCACACCAGTGAATCTAGCACAGCATACTTACTGGAACCTTAGGGGCCACAACAGTGGTGACATTCTTTCTCACACTGTTCAGATCTTTGGCTCACACATCACACCAGTGGACAGGCTTCTCATCCCCACCGGCGAAATCATATCTGTTAAGGGCACCCCTTATGATTTCCTTGAACCAAAAAAAGTTGGAAGCCAGATTCAGGAAGGTCTATATGACATGAACTATGTGCTAGACAAAAGTTTCAAAAAGCACTTAAGTAAGGTTGTTGTGGTGACAGACCCTGTCTCTGGGAGGAAATTGGAGCTTTGGTCAAACCAACTTGGTCTGCAGTTCTATACTAGTGGCCAGTTGAATGCTACCAAAGGCAAGGATGGAGCCGTATACCGCAAGCATGCCGGCATTGCCTTGGAGACACAGGGTTTCCCAGATTCTGTGAATTACCCTTACTTTCCATCCCAGATTGTGAGGCCTGGGGAGATTTATAAGCACACCATGCTTTACAGATTCACAACTAGCTAA
>Glyma.17g098400.1.p sequence-type=predicted peptide transcript=Glyma.17g098400.1 locus=Glyma.17g098400 ID=Glyma.17g098400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSKVFLLLCFLPGLLLVQAHKHHKKIGFYELKRGDLRLNLTNYGATIISVITPDKHGKLADIVLGYDSIDSYKNDTVYFGALIGRVANRIRGAKFTLDGKTYKLPANDHGNTLHGGARGFGDVVWSVESHKKHRHVTFTYDSFENEQGFPGKLKVSVTYMLIGRHKLAVKMIAKPVDKATPVNLAQHTYWNLRGHNSGDILSHTVQIFGSHITPVDRLLIPTGEIISVKGTPYDFLEPKKVGSQIQEGLYDMNYVLDKSFKKHLSKVVVVTDPVSGRKLELWSNQLGLQFYTSGQLNATKGKDGAVYRKHAGIALETQGFPDSVNYPYFPSQIVRPGEIYKHTMLYRFTTS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
