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Report for Sequence Feature Glyma.17g089700

Feature Type:gene_model
Chromosome:Gm17
Start:6986435
stop:6992867
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g089700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G62810.1AT peroxin 14 JGI N/AIEA
GO:0016560GO-bp protein import into peroxisome matrix, docking EnsemblGenomesN/AIEA
GO:0005778GO-cc peroxisomal membrane EnsemblGenomesN/AIEA
GO:1990429GO-cc peroxisomal importomer complex EnsemblGenomesN/AIEA
GO:0005102GO-mf signaling receptor binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
PTHR23058Panther PEROXISOMAL MEMBRANE PROTEIN PEX14 JGI N/AIEA
PF04695PFAM Peroxisomal membrane anchor protein (Pex14p) conserved region JGI N/AIEA

Expression Patterns of Glyma.17g089700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g089700
ParalogEvidenceComments
Glyma.05g037400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g089700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g09750 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g089700
>Glyma.17g089700.2 sequence-type=transcript locus=Glyma.17g089700 ID=Glyma.17g089700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAACGTTAGATTATGGAGTTTGATATTTGATGAACAAATTGAACTCCAGATAAGCCAGAAAAGAAAAAAAAAAAGTCCTTTCCAAAAAGGGGAATGAAATGAAAGATGATTATTATGTTGGTGGTTTTTTATGGGTGAATTGGCGTGTAGCGTAGCTGAAGGTTGGAGAAGCAGAAGAGCGAATAAAAGCCCATTCTCATGAGTCTTTTGGTCCTTTGCAACGCAGCAGTAGAGTAGCCAACATGGCCACCCAATcaccgcctcctcccactcccaccgccaccgaccaAAACCAAGGTTCTGAAGTCGTGCAAGCAACAACTGTAGATCAGCAAAATGCCAGAGAAGAGCCTGCTAAACAGAGTTCAACTACATCAGTCTTTGTGAACTCGCAACTGATGCGAGAAGAACAAATTCAGAATGCTGTGAAATTTCTATCACACCCAAAAGTTATAGGTTCACCTGTCATGTATAGGCGATCATTTCTAGAGAAGAAGGGCCTTACGAAGGAGGAGATTGATGAAGCTTTTCAGCGTGTGCCAGATTCAGCTCCAACAGTGCAGACAGGTGGTGTAAATCAAGATGGCCAATTGAAATCGTCATCAAACATTCAGCAACAAGCCCAACATCAAACTTTGCAGCCGGGTTTACCTGCTTCTACTGGTGTTAATACTTCGCCGGGAACCTTATCACGCTCCAAATTTCACTGGTCTCATACACTTATTGCAGTTGGATTACTGGCTGCTTCAGGTGCTGGAACAGCTATAATAATTAAGAATTCTGTTCTCCCTCGGTTAAAATCTTGGATACGTAAGGTTGTCTTAGACAATGATGATGAACAATTAAAGAAAACTGACAACAAACCGACACTGATGGAAGAAGCTGCGCAagctgcaaaatcagctgcagctgcagctgcagatgTGGCAAAAGCAAGCCAAGAAATGCTGGCTTCAAAAGGTGAAGAGAGGAGATACTTTGTGGAAGTTGTGAGCCTTTTAGATAAACAAGTACAAGAAATGAAGTCAATGACAAATGCCATAAGAAGGTTGGAAGGGCAAGAAGATCTTCAAATCAGTCAAACAAGTTCGAAGCAACTGATTGTGAATGGAAAAGCAGACTACGACTTGCATTCAGTGAGATTTTCATCCCCACCTACATCTGTTGAACCATCAAGTGGTCTTCATCCAAAGGCATATGCGGAGCCTTGGGAGGTTAGTCAGGTGCAAAGCACGTCTACCCAGATGCTTCAGTCTCAAGTAAATGGTGAAGACTTGAATACTAAGGCCCAGGATACCCCTCTAGTAAATGGGGATGACTCATTACCCTGGTGGCAGAGGAAAAATGTCAGAATCAGAGAGATTGATAATGAAAATGAGTCTAATGGAGTACCTTATGCTTCTGCATCCAATCAGCAGCCAGTCCAACGCGTATGGGTTCCTCCTCAACCTCCCCCCATAGCTATGCCGGAGGCTGCAGAAGCAATCAGACGACCAAAACCAGCGGCCCAAAAGGAACAGGTGTCTGATAATCAGTCAGTAGCTCATTCTTTAGACAGCTCTGATGACGTACATATGGCCCCAAAACTATTGGAATCCGAAGGTGCAGTAGAGGGCAGCAGTGTCAGCTCGGTTCCCACCTCTAGTGAGATACAAGAGGAGCATGAAGTCAAATATGATGAGAAATGAAGGTGAATCATGCATGATCTATCATGAAAAAACATGAAGTCGGAAATAACACTTGAAGTAGTCCCATATTTGGAATAAGCTTGTCACACAATCTGTTTCATAATCATATATAGTTGTACTTTTGAACTGGACATCAATACAATATGCAAATGCACGTATCTTTCTATGCAAGAATTTGTTTACTAAAGC
Coding sequences of Glyma.17g089700
>Glyma.17g089700.1 sequence-type=CDS polypeptide=Glyma.17g089700.1.p locus=Glyma.17g089700 ID=Glyma.17g089700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACCCAATCACCGCCTCCTCCCACTCCCACCGCCACCGACCAAAACCAAGGTTCTGAAGTCGTGCAAGCAACAACTGTAGATCAGCAAAATGCCAGAGAAGAGCCTGCTAAACAGAGTTCAACTACATCAGTCTTTGTGAACTCGCAACTGATGCGAGAAGAACAAATTCAGAATGCTGTGAAATTTCTATCACACCCAAAAGTTATAGGTTCACCTGTCATGTATAGGCGATCATTTCTAGAGAAGAAGGGCCTTACGAAGGAGGAGATTGATGAAGCTTTTCAGCGTGTGCCAGATTCAGCTCCAACAGTGCAGACAGGTGGTGTAAATCAAGATGGCCAATTGAAATCGTCATCAAACATTCAGCAACAAGCCCAACATCAAACTTTGCAGCCGGGTTTACCTGCTTCTACTGGTGTTAATACTTCGCCGGGAACCTTATCACGCTCCAAATTTCACTGGTCTCATACACTTATTGCAGTTGGATTACTGGCTGCTTCAGGTGCTGGAACAGCTATAATAATTAAGAATTCTGTTCTCCCTCGGTTAAAATCTTGGATACGTAAGGTTGTCTTAGACAATGATGATGAACAATTAAAGAAAACTGACAACAAACCGACACTGATGGAAGAAGCTGCGCAAGCTGCAAAATCAGCTGCAGCTGCAGCTGCAGATGTGGCAAAAGCAAGCCAAGAAATGCTGGCTTCAAAAGGTGAAGAGAGGAGATACTTTGTGGAAGTTGTGAGCCTTTTAGATAAACAAGTACAAGAAATGAAGTCAATGACAAATGCCATAAGAAGGTTGGAAGGGCAAGAAGATCTTCAAATCAGTCAAACAAGTTCGAAGCAACTGATTGTGAATGGAAAAGCAGACTACGACTTGCATTCAGTGAGATTTTCATCCCCACCTACATCTGTTGAACCATCAAGTGGTCTTCATCCAAAGGCATATGCGGAGATAATGGCCATGGTCCAAAGAGGAGAGAAGTCTTCTAATATTAGGCCTTGGGAGGTTAGTCAGGTGCAAAGCACGTCTACCCAGATGCTTCAGTCTCAAGTAAATGGTGAAGACTTGAATACTAAGGCCCAGGATACCCCTCTAGTAAATGGGGATGACTCATTACCCTGGTGGCAGAGGAAAAATGTCAGAATCAGAGAGATTGATAATGAAAATGAGTCTAATGGAGTACCTTATGCTTCTGCATCCAATCAGCAGCCAGTCCAACGCGTATGGGTTCCTCCTCAACCTCCCCCCATAGCTATGCCGGAGGCTGCAGAAGCAATCAGACGACCAAAACCAGCGGCCCAAAAGGAACAGGTGTCTGATAATCAGTCAGTAGCTCATTCTTTAGACAGCTCTGATGACGTACATATGGCCCCAAAACTATTGGAATCCGAAGGTGCAGTAGAGGGCAGCAGTGTCAGCTCGGTTCCCACCTCTAGTGAGATACAAGAGGAGCATGAAGTCAAATATGATGAGAAATGA

>Glyma.17g089700.2 sequence-type=CDS polypeptide=Glyma.17g089700.2.p locus=Glyma.17g089700 ID=Glyma.17g089700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACCCAATCACCGCCTCCTCCCACTCCCACCGCCACCGACCAAAACCAAGGTTCTGAAGTCGTGCAAGCAACAACTGTAGATCAGCAAAATGCCAGAGAAGAGCCTGCTAAACAGAGTTCAACTACATCAGTCTTTGTGAACTCGCAACTGATGCGAGAAGAACAAATTCAGAATGCTGTGAAATTTCTATCACACCCAAAAGTTATAGGTTCACCTGTCATGTATAGGCGATCATTTCTAGAGAAGAAGGGCCTTACGAAGGAGGAGATTGATGAAGCTTTTCAGCGTGTGCCAGATTCAGCTCCAACAGTGCAGACAGGTGGTGTAAATCAAGATGGCCAATTGAAATCGTCATCAAACATTCAGCAACAAGCCCAACATCAAACTTTGCAGCCGGGTTTACCTGCTTCTACTGGTGTTAATACTTCGCCGGGAACCTTATCACGCTCCAAATTTCACTGGTCTCATACACTTATTGCAGTTGGATTACTGGCTGCTTCAGGTGCTGGAACAGCTATAATAATTAAGAATTCTGTTCTCCCTCGGTTAAAATCTTGGATACGTAAGGTTGTCTTAGACAATGATGATGAACAATTAAAGAAAACTGACAACAAACCGACACTGATGGAAGAAGCTGCGCAAGCTGCAAAATCAGCTGCAGCTGCAGCTGCAGATGTGGCAAAAGCAAGCCAAGAAATGCTGGCTTCAAAAGGTGAAGAGAGGAGATACTTTGTGGAAGTTGTGAGCCTTTTAGATAAACAAGTACAAGAAATGAAGTCAATGACAAATGCCATAAGAAGGTTGGAAGGGCAAGAAGATCTTCAAATCAGTCAAACAAGTTCGAAGCAACTGATTGTGAATGGAAAAGCAGACTACGACTTGCATTCAGTGAGATTTTCATCCCCACCTACATCTGTTGAACCATCAAGTGGTCTTCATCCAAAGGCATATGCGGAGCCTTGGGAGGTTAGTCAGGTGCAAAGCACGTCTACCCAGATGCTTCAGTCTCAAGTAAATGGTGAAGACTTGAATACTAAGGCCCAGGATACCCCTCTAGTAAATGGGGATGACTCATTACCCTGGTGGCAGAGGAAAAATGTCAGAATCAGAGAGATTGATAATGAAAATGAGTCTAATGGAGTACCTTATGCTTCTGCATCCAATCAGCAGCCAGTCCAACGCGTATGGGTTCCTCCTCAACCTCCCCCCATAGCTATGCCGGAGGCTGCAGAAGCAATCAGACGACCAAAACCAGCGGCCCAAAAGGAACAGGTGTCTGATAATCAGTCAGTAGCTCATTCTTTAGACAGCTCTGATGACGTACATATGGCCCCAAAACTATTGGAATCCGAAGGTGCAGTAGAGGGCAGCAGTGTCAGCTCGGTTCCCACCTCTAGTGAGATACAAGAGGAGCATGAAGTCAAATATGATGAGAAATGA
Predicted protein sequences of Glyma.17g089700
>Glyma.17g089700.1.p sequence-type=predicted peptide transcript=Glyma.17g089700.1 locus=Glyma.17g089700 ID=Glyma.17g089700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATQSPPPPTPTATDQNQGSEVVQATTVDQQNAREEPAKQSSTTSVFVNSQLMREEQIQNAVKFLSHPKVIGSPVMYRRSFLEKKGLTKEEIDEAFQRVPDSAPTVQTGGVNQDGQLKSSSNIQQQAQHQTLQPGLPASTGVNTSPGTLSRSKFHWSHTLIAVGLLAASGAGTAIIIKNSVLPRLKSWIRKVVLDNDDEQLKKTDNKPTLMEEAAQAAKSAAAAAADVAKASQEMLASKGEERRYFVEVVSLLDKQVQEMKSMTNAIRRLEGQEDLQISQTSSKQLIVNGKADYDLHSVRFSSPPTSVEPSSGLHPKAYAEIMAMVQRGEKSSNIRPWEVSQVQSTSTQMLQSQVNGEDLNTKAQDTPLVNGDDSLPWWQRKNVRIREIDNENESNGVPYASASNQQPVQRVWVPPQPPPIAMPEAAEAIRRPKPAAQKEQVSDNQSVAHSLDSSDDVHMAPKLLESEGAVEGSSVSSVPTSSEIQEEHEVKYDEK*

>Glyma.17g089700.2.p sequence-type=predicted peptide transcript=Glyma.17g089700.2 locus=Glyma.17g089700 ID=Glyma.17g089700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATQSPPPPTPTATDQNQGSEVVQATTVDQQNAREEPAKQSSTTSVFVNSQLMREEQIQNAVKFLSHPKVIGSPVMYRRSFLEKKGLTKEEIDEAFQRVPDSAPTVQTGGVNQDGQLKSSSNIQQQAQHQTLQPGLPASTGVNTSPGTLSRSKFHWSHTLIAVGLLAASGAGTAIIIKNSVLPRLKSWIRKVVLDNDDEQLKKTDNKPTLMEEAAQAAKSAAAAAADVAKASQEMLASKGEERRYFVEVVSLLDKQVQEMKSMTNAIRRLEGQEDLQISQTSSKQLIVNGKADYDLHSVRFSSPPTSVEPSSGLHPKAYAEPWEVSQVQSTSTQMLQSQVNGEDLNTKAQDTPLVNGDDSLPWWQRKNVRIREIDNENESNGVPYASASNQQPVQRVWVPPQPPPIAMPEAAEAIRRPKPAAQKEQVSDNQSVAHSLDSSDDVHMAPKLLESEGAVEGSSVSSVPTSSEIQEEHEVKYDEK*






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