SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G16760.1 | AT | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | JGI | N/A | IEA |
| GO:0010264 | GO-bp | myo-inositol hexakisphosphate biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0032957 | GO-bp | inositol trisphosphate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0032957 | GO-bp | inositol trisphosphate metabolic process | JGI | N/A | IEA |
| GO:0052746 | GO-bp | inositol phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0005622 | GO-cc | intracellular | EnsemblGenomes | N/A | IEA |
| GO:0005622 | GO-cc | intracellular | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016301 | GO-mf | kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0047325 | GO-mf | inositol tetrakisphosphate 1-kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0047325 | GO-mf | inositol tetrakisphosphate 1-kinase activity | JGI | N/A | IEA |
| GO:0052725 | GO-mf | inositol-1,3,4-trisphosphate 6-kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0052725 | GO-mf | inositol-1,3,4-trisphosphate 6-kinase activity | JGI | N/A | IEA |
| GO:0052726 | GO-mf | inositol-1,3,4-trisphosphate 5-kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0052726 | GO-mf | inositol-1,3,4-trisphosphate 5-kinase activity | JGI | N/A | IEA |
| PTHR14217 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PF05770 | PFAM | Inositol 1, 3, 4-trisphosphate 5/6-kinase | JGI | N/A | IEA |
| PWY-4562 | SoyCyc9 | lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) | Plant Metabolic Network | ISS | |
| PWY-4661 | SoyCyc9 | 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) | Plant Metabolic Network | ISS | |
| PWY-4765 | SoyCyc9 | superpathway of lipid-dependent phytate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-6554 | SoyCyc9 | 1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3) | Plant Metabolic Network | ISS | |
| GN7V-41138 | SoyCyc9-rxn | inositol-1,3,4-trisphosphate 5/6-kinase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| ITPK2 | inositol phosphate kinase |
|
Glyma.17g089000 not represented in the dataset |
Glyma.17g089000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g09680 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g089000.1 sequence-type=CDS polypeptide=Glyma.17g089000.1.p locus=Glyma.17g089000 ID=Glyma.17g089000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCCGAGTCGGAAGTAGCAGGTCAGAGGTACCGTGTGGGCTATGCTCTCCAAGGCAAGAAAGTCGAAAGCTTCATTCAACCCTCACTCCTCGATCACGCCAAACAACACAGCATCGATCTCGTCCAAATCGACCCCACCGCACCCTTACAACAACAAGGTCCTTTCCACTGCATCATTCACAAACTCCACACCCAACACTGGAAAAACCTCCTCCAACAATTCTCATCCAAACACCCAAACACCGTAATCATCGACCCTCCCGAGCTGGTGGATCGCCTGCACAACCGGGTTTCAATGCTCGACGCAGTGACCCACTTACAATTTTCCCTCGAAAACGCCACCATTGGGGTTCCAAAGCAAGTGGTTGTGAACGAACCCAAATCCTTCGATTTGCACAAATTCGAAGAAGAACAGGGCTTGCGGTTCCCGGTGATTGCGAAACCGCTGGCGGCTGACGGCGGCGCCGGCTCTCACGAACTGTGTTTGGTTTTCGACGAGGAGGGACTCCACGCGTTGAGCGTTCCCATGGTGCTGCAAGAGTTCGTGAATCACGGCGGGGTCGTGTTCAAGATTTACGTTGCTGGGCAGCGCGTGAATTGCGTAAAGCGCAAGTCTTTGGGTGACATAACGGAAGAGAAGCTGAAAGTGTTAAGGGGGTCGCTGCCGTTTTCTCGTGTGTCGAGTTTGGGGGTTGAAGACGAGGGTGGCGGCGCCGTTGAGGACGCTGAAATGCCTCCGCAGAGTTTGGTGGGTGAGTTGGCGAGGGGATTGAGGGAGGCATTGGGACTTAACCTTTTTAACGTTGATGTCATTAGAGATGGTAAGGAACCGACAAGGTACCTCGTTATTGATATCAATTACTTTCCCGGGTATGCGAAATTGCCCTCTTATGAGCCTTTTATCACCGATTTTTTGTTGGACATTGTACGCTCCAAGACTGCGTAG
>Glyma.17g089000.1.p sequence-type=predicted peptide transcript=Glyma.17g089000.1 locus=Glyma.17g089000 ID=Glyma.17g089000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSESEVAGQRYRVGYALQGKKVESFIQPSLLDHAKQHSIDLVQIDPTAPLQQQGPFHCIIHKLHTQHWKNLLQQFSSKHPNTVIIDPPELVDRLHNRVSMLDAVTHLQFSLENATIGVPKQVVVNEPKSFDLHKFEEEQGLRFPVIAKPLAADGGAGSHELCLVFDEEGLHALSVPMVLQEFVNHGGVVFKIYVAGQRVNCVKRKSLGDITEEKLKVLRGSLPFSRVSSLGVEDEGGGAVEDAEMPPQSLVGELARGLREALGLNLFNVDVIRDGKEPTRYLVIDINYFPGYAKLPSYEPFITDFLLDIVRSKTA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
