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Report for Sequence Feature Glyma.17g088900

Feature Type:gene_model
Chromosome:Gm17
Start:6902469
stop:6904437
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g088900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G22220.1AT SufE/NifU family protein JGI N/AIEA
GO:0006879GO-bp cellular iron ion homeostasis EnsemblGenomesN/AIEA
GO:0016226GO-bp iron-sulfur cluster assembly EnsemblGenomesN/AIEA
GO:0016226GO-bp iron-sulfur cluster assembly JGI N/AIEA
GO:0097428GO-bp protein maturation by iron-sulfur cluster transfer EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005759GO-cc mitochondrial matrix EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding JGI N/AIEA
GO:0008198GO-mf ferrous iron binding EnsemblGenomesN/AIEA
GO:0036455GO-mf iron-sulfur transferase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0051536GO-mf iron-sulfur cluster binding EnsemblGenomesN/AIEA
GO:0051536GO-mf iron-sulfur cluster binding JGI N/AIEA
GO:0051537GO-mf 2 iron, 2 sulfur cluster binding EnsemblGenomesN/AIEA
GO:0051539GO-mf 4 iron, 4 sulfur cluster binding EnsemblGenomesN/AIEA
KOG3361 KOG Iron binding protein involved in Fe-S cluster formation JGI N/AIEA
PTHR10093Panther IRON-SULFUR CLUSTER ASSEMBLY ENZYME (NIFU HOMOLOG) JGI N/AIEA
PF01592PFAM NifU-like N terminal domain JGI N/AIEA

Expression Patterns of Glyma.17g088900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g088900 not represented in the dataset
Glyma.17g088900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g088900
ParalogEvidenceComments
Glyma.05g038100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g088900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g09670 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g088900
>Glyma.17g088900.2 sequence-type=transcript locus=Glyma.17g088900 ID=Glyma.17g088900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTCGTGGCATTCCTCTCTCTCGTGTCGGGTGAAGGGAAAAATCAAATCAACATGCTGAGAGTGGGCGCAAAGAGGGTTTTGGAAACGACGTTGTTTGGGGTTAGGGTTCCGGCGAGGCTGTACCACGAGAGGGTTGTGGATCACTACGACAACCCCCGGAACGTTGGATCGTTTGACAAGAACGACCCGAGCGTGGGGACGGGTTTGGTGGGGGCCCCGGCGTGCGGCGATGTGATGAAGCTCCAGATTAAGGTCGACGACAAAACCGGAAAAATCGTCGATGCTCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACCATGCTTGCTGAAGATGCTATCAAAGCGGCCGTTAAAGACTATGAAGCTAAGCGTGCTAAGGCAACTGCTAGCGGAGAGGCAGCAACAGAAGAGAAGCCTGCCACTGCATGATTTCTTTCATATATAGAAAGAATGATGACGAAAACAACCGTTTGTTTGTTTGTTTATTCTTAATCAGTTTCTTATCGAAGAGCACCTTCACTTGAGACTTTGGGTTGGACTTAGCTGGAGAGTATTCACATTCTGTGAACTAAATATTTGAAATGCCAGCTATGGTTTGTTATCTTCTCGGTTTGTATTTAGTAGTACTGCATTATTAAATGTGTAAGAATGCTATAAAGCAGATTTGAATGTTTGAAAGTTCCCCAATACAATTAAGTGAATAGCATGATATTTTCACAAGTTTTGTTCCCGAAGTCCTATTTTTGTAATATATTTGTTTTTTTTCTTCTTTT
Coding sequences of Glyma.17g088900
>Glyma.17g088900.1 sequence-type=CDS polypeptide=Glyma.17g088900.1.p locus=Glyma.17g088900 ID=Glyma.17g088900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGAGAGTGGGCGCAAAGAGGGTTTTGGAAACGACGTTGTTTGGGGTTAGGGTTCCGGCGAGGCTGTACCACGAGAGGGTTGTGGATCACTACGACAACCCCCGGAACGTTGGATCGTTTGACAAGAACGACCCGAGCGTGGGGACGGGTTTGGTGGGGGCCCCGGCGTGCGGCGATGTGATGAAGCTCCAGATTAAGGTCGACGACAAAACCGGAAAAATCGTCGATGCTCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCATGCTTGCTGAAGATGCTATCAAAGCGGCCGTTAAAGACTATGAAGCTAAGCGTGCTAAGGCAACTGCTAGCGGAGAGGCAGCAACAGAAGAGAAGCCTGCCACTGCATGA

>Glyma.17g088900.2 sequence-type=CDS polypeptide=Glyma.17g088900.2.p locus=Glyma.17g088900 ID=Glyma.17g088900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGAGAGTGGGCGCAAAGAGGGTTTTGGAAACGACGTTGTTTGGGGTTAGGGTTCCGGCGAGGCTGTACCACGAGAGGGTTGTGGATCACTACGACAACCCCCGGAACGTTGGATCGTTTGACAAGAACGACCCGAGCGTGGGGACGGGTTTGGTGGGGGCCCCGGCGTGCGGCGATGTGATGAAGCTCCAGATTAAGGTCGACGACAAAACCGGAAAAATCGTCGATGCTCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACCATGCTTGCTGAAGATGCTATCAAAGCGGCCGTTAAAGACTATGAAGCTAAGCGTGCTAAGGCAACTGCTAGCGGAGAGGCAGCAACAGAAGAGAAGCCTGCCACTGCATGA
Predicted protein sequences of Glyma.17g088900
>Glyma.17g088900.1.p sequence-type=predicted peptide transcript=Glyma.17g088900.1 locus=Glyma.17g088900 ID=Glyma.17g088900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLRVGAKRVLETTLFGVRVPARLYHERVVDHYDNPRNVGSFDKNDPSVGTGLVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKGRQMEEVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKATASGEAATEEKPATA*

>Glyma.17g088900.2.p sequence-type=predicted peptide transcript=Glyma.17g088900.2 locus=Glyma.17g088900 ID=Glyma.17g088900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLRVGAKRVLETTLFGVRVPARLYHERVVDHYDNPRNVGSFDKNDPSVGTGLVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKGRQMEEVLTIKNTMLAEDAIKAAVKDYEAKRAKATASGEAATEEKPATA*






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