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Report for Sequence Feature Glyma.17g085800

Feature Type:gene_model
Chromosome:Gm17
Start:6629811
stop:6630764
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g085800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63100.1AT S-adenosyl-L-methionine-dependent methyltransferases superfamily protein JGI N/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
BSUBPOLYAMSYN-PWYSoyCyc9 spermidine biosynthesis I Plant Metabolic Network ISS
POLYAMINSYN3-PWYSoyCyc9 superpathway of polyamine biosynthesis II Plant Metabolic Network ISS
PWY-7528SoyCyc9 L-methionine salvage cycle I (bacteria and plants) Plant Metabolic Network ISS
GN7V-65308SoyCyc9-rxn spermidine synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g085800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g085800 not represented in the dataset
Glyma.17g085800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g085800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g09330 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g085800
>Glyma.17g085800.1 sequence-type=CDS polypeptide=Glyma.17g085800.1.p locus=Glyma.17g085800 ID=Glyma.17g085800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGATGGTGGTGCTTTCTTCCCCGCAAACCCTAGCACAAACAGCGTTCCTCCGAAATTCAATTCCCAGCCCAACCAGAGTGTCCCTTTCTCTCAAAACCCCGTGTTCTTCATTAACAGCAAAATGCCAGCAACAACAAAAAACTCAAGAAGACGGCATTCCCGCGGACGAGGTTAAAATCCTTGCGAAATTCAAGTCCCGCCACAACTACATCCGCGTTCTAGAAGTTTCTAGAAAAGCAGAACACCCCTTCCGCGGCTCCAGGCTCCTCCTTCTCGACACCCCCGGAAACATCCACAGCATATCTTTCCTCTTCAAGTCCCTCACCAATACTTACTTCGACGTCTTCGCCACGCTCCCTCCCATCGTTCCCCCCGGCCCCCTCGCCCTCCTCGGCTTCGGCGCCGGCACCGCCGCCCGCCTCCTCCTCCTCCACCACCCCTCCGCCCTCCTCCACTGCTGGGAGCTCGACCCCGCCGTCATCCAGGTCGCCCGCGAGTACTTCAACCTCGCCCGCCTCGAGAGGGACAACCAAGACCGCCTCTTCATCTACGTCGGCGACGCCCTCAACGCCACCGTCCCCAACGGCTTCTCCGGGATCGTCGTCGACCTCTTTTCGAAGGGCTCTTTAATCCCCGAGCTCCAGGATCCCGCCACTTGGCGGATGCTGAGGGGGAGGTTGAGGAAGGGAGGGAGGATCATGGTGAACGTTGGCGGGAGCTGCGTGGAGGCGGAGAATAGGCTCAGAGATGGGAAGGTTGTTATGGAAGAGACTCTCGGAGCGATGAAGGAGGTTTTCGGAAAGAAGGTTTTTGTTCTGAGTCTGGGGAATCGTAAGGATGATAGCTCGCTTGCTCTCACTGGGGATTTGCCTCACCTTGAGGAATGGAAGAACCGCCTTCCTGGTCCCTTCAAATGTTACGCTGACATGTGGACACCTTACTCTCAGTAG
Predicted protein sequences of Glyma.17g085800
>Glyma.17g085800.1.p sequence-type=predicted peptide transcript=Glyma.17g085800.1 locus=Glyma.17g085800 ID=Glyma.17g085800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWMVVLSSPQTLAQTAFLRNSIPSPTRVSLSLKTPCSSLTAKCQQQQKTQEDGIPADEVKILAKFKSRHNYIRVLEVSRKAEHPFRGSRLLLLDTPGNIHSISFLFKSLTNTYFDVFATLPPIVPPGPLALLGFGAGTAARLLLLHHPSALLHCWELDPAVIQVAREYFNLARLERDNQDRLFIYVGDALNATVPNGFSGIVVDLFSKGSLIPELQDPATWRMLRGRLRKGGRIMVNVGGSCVEAENRLRDGKVVMEETLGAMKEVFGKKVFVLSLGNRKDDSSLALTGDLPHLEEWKNRLPGPFKCYADMWTPYSQ*






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