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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G42490.1 | AT | Copper amine oxidase family protein | JGI | N/A | IEA |
| GO:0009308 | GO-bp | amine metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0009308 | GO-bp | amine metabolic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005488 | GO-mf | binding | EnsemblGenomes | N/A | IEA |
| GO:0005507 | GO-mf | copper ion binding | EnsemblGenomes | N/A | IEA |
| GO:0005507 | GO-mf | copper ion binding | JGI | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0008131 | GO-mf | primary amine oxidase activity | EnsemblGenomes | N/A | IEA |
| GO:0008131 | GO-mf | primary amine oxidase activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0048038 | GO-mf | quinone binding | EnsemblGenomes | N/A | IEA |
| GO:0048038 | GO-mf | quinone binding | JGI | N/A | IEA |
| KOG1186 | KOG | Copper amine oxidase | JGI | N/A | IEA |
| PTHR10638 | Panther | COPPER AMINE OXIDASE | JGI | N/A | IEA |
| PTHR10638:SF12 | Panther | JGI | N/A | IEA | |
| PF01179 | PFAM | Copper amine oxidase, enzyme domain | JGI | N/A | IEA |
| PF02727 | PFAM | Copper amine oxidase, N2 domain | JGI | N/A | IEA |
| PF02728 | PFAM | Copper amine oxidase, N3 domain | JGI | N/A | IEA |
| GN7V-63218 | SoyCyc9-rxn | primary-amine oxidase | Plant Metabolic Network | ISS |
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Glyma.17g085500 not represented in the dataset |
Glyma.17g085500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g040800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g09295 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g085500.1 sequence-type=CDS polypeptide=Glyma.17g085500.1.p locus=Glyma.17g085500 ID=Glyma.17g085500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCTTAGTTCTGCAAAAGGCGACGCCTCCTCCTTCAGTTCTCGCTGCCTCCACCCATGCCAACAAGCTACCCACGCCTGTCATCTCTGAACCTTCTGCCACTCATGCCCTTCCTCCTAAAGGAATCAGTACAATGTCTAGGACCCAATCAAGCCATCCTTTGGACCCTTTATCTGCAGCCGAAATCTCTGTGGCAGTGGCAACTGTGAGGGCAGCTGGAGCCACTCCTGAGCTCAGAGACAGTATCCGCTTTATTGAAGTAGTTTTGTTGGAACCAGATAAACATGTTGTTGCACTGGCAGATGCTTATTTCTTTTCTCCTTTCCAACCATCATTGCTTCCTAGAACTAAAGGAGGAGCAGTAATTCCAAGTAATCTCCCTCCAAGATGTGCTAGAATTGTTGTTTACAATAAGAAGACAAATGAGACTAGTATATGGATTGTTGAATTATCACAAGTACATGCTGTAACTCGAAGAGGTCATCACCGTGGAAAAGTAATTTCATCACAGGTTGTTCCAGATGCTCAGCCTCCAATGGATGCTATGGAATATGCAGAATGTGAAGCTGTTGTTAAAGATTTCCCTCCATTTAGAGAGGCTATGAAGAAAAGGGGCATTGAAGACATGGATCTTGTAATGGTTGATGCCTGGTGTGTTGGTTATTACAATGAAGCTGACGATCCCAACCGTAGACTTACTAAGCCACTTATATTTTGCCGGGGCGAAAGTGACAGCCCTATGGAAAATGGCTATGCACGCCCGGTTGAGGGAATCTATGTGCTTGTTGATATGCAAAACATGCTGGTGATTGAATTTGAAGACCGTAAATTTGTTCCTCTGCCTCCAGTTGATCCCTTGAGGAGGTATACACATGGTGAAACAAGAGGTGGATTTGATAGAAGTGACATAAAACCCTTGCAAATTATTCAGCTTGAAGGCCCAAGCTTTCGTGTCGATGGATCTTATGTTGCATGGCAAAAGTGGAACTTTCGTATTGGATTCACTCCTAGAGAAGGTTTGGTTATATATTCGGTTGCATATATTGATGGTAGTCAAGGGCGAAGGCCTGTAGCACATAGACTGAGTTTTGTGGAGATGGTTGTGCCATATGGAGATCCAAATGAACCACATTACAGGAAGAATGCCTTTCATGCTGGGGAAAATGGCTTGGGAAAAAATGCACATTCTCTCAAGAAGGGGTGTGATTGTTTGGGCTACATCAAATACTTTGATGCTCATTTCACAAATTTCACTGGTGGAGTTGAGACAATTGAAAATTGTGTATGTTTGCATGAAGAGGATCATGGAATTCTTTGGAAGCATCATGATTGGAGAACTGGCTTAGCAGAAGTCCGAAGATCTAGAAGACTTTCAGTTTCTTTTATGTGTACTGTGGCTAACTATGAGTATGGATTTTTTTGGTACTTTTATCAGGCAATTAAGCTAACCGGAATTCTAAGTTTAGGATCCTTGTTACCTGGAGAGTTTCGTAAATATGGAACCACGATTGCGCCAGGTTTATATGCTCCAGTTCATCAACACTTTTTTGTAGCTCGCATGAACATGACTGTGGATTCTAAACCTGGCGATGCTTTGAATCAGGTCGTGGAGATCAATGTCAAAGTTGAGGAACCAGGGGACAATAATGTTCACAATAATGCATTTTATGCTGAAGAGACTCTGCTCAAATCTGAATTGGAAGCCATGCGTGATTGCAATCCTTTGGCTGCTCGACATTGGATTGTAAGGAACACGAGAATAGGCAATAGAACTGGACAGTTGACAGGCTATAAGTTGGTACCTGGCTCAAACTGCTTACCATTGGCAGGTTCTGAGGCCAAGTTTCTAAGAAGAGCTGCTTTCTTGAGGCATAATCTTTGGGTAACACCCTATTCACACGATCAAATGTTTCCTGGGGGAGAATTTCCTAATCAAAATCCACGTGTCAGCCAAGGACTAGCTACATGGGTTAAGCAAAACCGATCATTGGAAGAAACTGATATAGTTCTTTGGTATGTATTTGGAATCACACAGGTTCCTCGTTTGGAAGACTGGCCAGTTATGCCAGTAGAACGCATCGGTTTTATGCTCATGCCTCATGGATTCTTCAACTGTTCTCCTGCAGTGGATCCTAACCCTAACCCTGCCCCGGAAGAAGAAAAGAGTCTCCGGGACGAGCTGCTGGGTCCCATCCTGCTCGGAGAGCGCGTGATAAAACTGGCTCAGGAGGCGGAGTCGCCGAAGGTGGACTGCACGGAGCTGGCGCGTAAGGTGCAGGTGGTCTGCGATAACCTCCGCTCCGTGGTGCGCGTGGTGTCTGGAACCCAGTGCGTCAACGAGCGCCCAATCCGCCGCATCGTCGGCGAGGTCTCGAAAAACATAGAGCGCACGTTAGCCCTCATCCGCAAGTGCAAGAAGCACGGTGGCGTCCTCCGCCAGGTCTTCTCCATGACCACCACCGCCGACTTCCGCAAAGTCCGGAGCCTTCTCGAATCTTCCAACGGCGACCTGGTGTGGCTCCTCACCATCTTGGACTCCAAAGACGGCACCAATGTCTCACTCCCCCCTATCGCCAGCAACGACCCTATTCTCGCTTGGGTCTGGACCTTCACCTACACTCTCCAATTGGGCCAGCCCAAGGACCGCGCAGAAGCCGCCACTGAACTCGGTTCTCTCGCCAGAGACAACGACCGTACAAAATTTATCATATTGGATGAAGGTGGGGTGATGCCCCTCCTCAAGCTTCTTAAAGAAGCTTCTTCCCCTGCTGCTCAGGTCGCTGCTGCCAATGCTCTTGTTAACATCACAACCAATCAAGACAGGGTTGTTACTTTCATTGTGGAGTCCCATGCTGTCCCCATCATTGTTCAGGTTCTCGGTGATTCCCCTATGAGGGTTCGTGTCTCTGTTGCCAATTTGGTCTCTGCTATGGCCGAGCAACATGAACTTGCTCGCGAGGAGTTCGTCAGGGCCAATGTCGCTAGGCCCCTTGTGTCCTTGTTGTCCATGGATATGGGTACTGTCCTCACTGACCCCGTGGCCGACCGCGCCACCAGCATTCACTCGCTTGTTCTCAATTTATCCAATGTTGGGGAGGCGAATTCAGATGGGAGTAGCCGCGGCTCCGGCCAGCATCGAAGAGATAGAGAGGTCGAGAGCCCCGAGTTGAGGAATGAGGTCAAAGTCAGTTGTGCTAAGGCTCTTTGGAAACTCTCCAATGGATGTCTCTCAAGTTGCAGGAAGATTACCGAGACTAAAGGTTTGCTTTGTCTTGCCAAGATTATTGAGTCCGAGAGTGGGGAGTTGCAGCTTAATTGTCTTATGGCTGTCATGGAGATTGCTGCCGTGGCGGAGTCCAATGCTGATCTTAGAAGAGCTGCTTTTAAGCGAACTGCGCCGGCGGCAAAGGCGGTTTTGGATCAGCTTTTGCGGGTGGTTCAGGAGGAGAGCGACCCGGCATTGCGGATTCCTGCTATTAAGGCAATTGGTTCCTTGGCCAGAAACTTCTCTGGGAAGGTTCCGCAGGTTATTGGTCCTTTAGTTGCTCAGCTTGGTAACAGAGATGTTGATGTGGCCAGTGAGGCTGCTATTGCTTTGGGGAAGTTTGTGTGCCCGGACAACTACAACTGTGTTGACCATTCTAAGGCAATACTTGAGCTTGATGGGATTCCTAAGCTAATGAGCCTGCTGCAGATAAATGATCGCCAACAAGTTCATGGCCTGAAATTACTTTGTTACCTTGCCTTAAATGTTGGTAACAGTAGGGTCCTTGAGCAAGAACGTGCCTTGAATACCCTAGAGAGATTTGCTCGTCCTGTTCAAGCACAACATCCTGATTTGAAGGACCTTTTTGCAAAGGCCTTACACCACCTCACTCTTTATCAGCCAGGAGCTCAATTGCACAGACAGCCCTTGGGGCTGTAA
>Glyma.17g085500.1.p sequence-type=predicted peptide transcript=Glyma.17g085500.1 locus=Glyma.17g085500 ID=Glyma.17g085500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MALVLQKATPPPSVLAASTHANKLPTPVISEPSATHALPPKGISTMSRTQSSHPLDPLSAAEISVAVATVRAAGATPELRDSIRFIEVVLLEPDKHVVALADAYFFSPFQPSLLPRTKGGAVIPSNLPPRCARIVVYNKKTNETSIWIVELSQVHAVTRRGHHRGKVISSQVVPDAQPPMDAMEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDAWCVGYYNEADDPNRRLTKPLIFCRGESDSPMENGYARPVEGIYVLVDMQNMLVIEFEDRKFVPLPPVDPLRRYTHGETRGGFDRSDIKPLQIIQLEGPSFRVDGSYVAWQKWNFRIGFTPREGLVIYSVAYIDGSQGRRPVAHRLSFVEMVVPYGDPNEPHYRKNAFHAGENGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHHDWRTGLAEVRRSRRLSVSFMCTVANYEYGFFWYFYQAIKLTGILSLGSLLPGEFRKYGTTIAPGLYAPVHQHFFVARMNMTVDSKPGDALNQVVEINVKVEEPGDNNVHNNAFYAEETLLKSELEAMRDCNPLAARHWIVRNTRIGNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLRHNLWVTPYSHDQMFPGGEFPNQNPRVSQGLATWVKQNRSLEETDIVLWYVFGITQVPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDPNPNPAPEEEKSLRDELLGPILLGERVIKLAQEAESPKVDCTELARKVQVVCDNLRSVVRVVSGTQCVNERPIRRIVGEVSKNIERTLALIRKCKKHGGVLRQVFSMTTTADFRKVRSLLESSNGDLVWLLTILDSKDGTNVSLPPIASNDPILAWVWTFTYTLQLGQPKDRAEAATELGSLARDNDRTKFIILDEGGVMPLLKLLKEASSPAAQVAAANALVNITTNQDRVVTFIVESHAVPIIVQVLGDSPMRVRVSVANLVSAMAEQHELAREEFVRANVARPLVSLLSMDMGTVLTDPVADRATSIHSLVLNLSNVGEANSDGSSRGSGQHRRDREVESPELRNEVKVSCAKALWKLSNGCLSSCRKITETKGLLCLAKIIESESGELQLNCLMAVMEIAAVAESNADLRRAAFKRTAPAAKAVLDQLLRVVQEESDPALRIPAIKAIGSLARNFSGKVPQVIGPLVAQLGNRDVDVASEAAIALGKFVCPDNYNCVDHSKAILELDGIPKLMSLLQINDRQQVHGLKLLCYLALNVGNSRVLEQERALNTLERFARPVQAQHPDLKDLFAKALHHLTLYQPGAQLHRQPLGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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