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Report for Sequence Feature Glyma.17g083400

Feature Type:gene_model
Chromosome:Gm17
Start:6472716
stop:6478421
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g083400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G08170.1AT porphyromonas-type peptidyl-arginine deiminase family protein JGI N/AIEA
GO:0009446GO-bp putrescine biosynthetic process EnsemblGenomesN/AIEA
GO:0009446GO-bp putrescine biosynthetic process JGI N/AIEA
GO:0004668GO-mf protein-arginine deiminase activity EnsemblGenomesN/AIEA
GO:0004668GO-mf protein-arginine deiminase activity JGI N/AIEA
GO:0047632GO-mf agmatine deiminase activity EnsemblGenomesN/AIEA
PF04371PFAM Porphyromonas-type peptidyl-arginine deiminase JGI N/AIEA
POLYAMINSYN3-PWYSoyCyc9 superpathway of polyamine biosynthesis II Plant Metabolic Network ISS
PWY-43SoyCyc9 putrescine biosynthesis II Plant Metabolic Network ISS
GN7V-49418SoyCyc9-rxn agmatine deiminase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g083400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g083400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g09090 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g083400
>Glyma.17g083400.2 sequence-type=transcript locus=Glyma.17g083400 ID=Glyma.17g083400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGCCAGCACGCCAAAAAGAACTTCTTTGCAAAACACGACTGAGGACCTTGCAACACCGGCGTCTCCCTCCTTCCTCTCCTCTCTCTGCCTTTACCTTTGATTGTAGGTTTTTCATTATTTGGCGGCGAAACAGGGTTGAATATTTTTGTTTTAGCGTCTGAGCTTTGAATTACAGAGCAAAGTGAAGCGTGAACATGGTGATGCATCTAAACGGGACACCGTGCGCTCTCGGATTCCACATGCCTGCGGAGTGGGAAACCCACGCGCAGTGCTGGATGGGTTGGCCTGAACGTGCCGATAACTGGCGTGACGGCGCCGTTCACGCCCAACGCGTGTTTGCGAGGGTAGCGTCAGCAATCTCAAGATTCGAGTCTGTAACAGTTTGTGTTAGTTCTGCACAGTGGGAGAACGCGCGGAGTCAGCTACCGGAGCATATCAGGGTCGTTGAGATGAACATGAACGATTCTTGGTTCCGTGATATTGGACCTACTTTTGTTGTGAGAAGAAGCACCACGCCGGAATCTGGTGATGCAGTGAGCAGGATTGCAGGGATTGACTGGAATTTTAATAGTTGGGGAGGCTTAGAAGATGGATGTTACTGTGATTGGAGTCTTGATTTGCTTGTGGCTAAGAAGATTTTGGGAATTGAGAAGATTCCTAGATTTTCACATTCGATGGTGCTTGAAGGTGGAAGCATCCATGTGGATGGAGAAGGAACTTGTCTTACCACAGAAGAGTGCCTCTTGAACAAGAACAGGAACCCTCACTTGAGTAAGAACCAAATAGAGGATGAACTTAAGACATATCTTGGAATCCGGAAGGTTATATGGTTGCCTCGTGGATTATATGGAGATGATGACACAAATGGTCATATTGATAACATGTGCTGTTTTGTGAGGCCTGGTGTGGTTATGCTGTCTTGGATTGATGATGAAACTGATCCTCAGTATGAAAGATCTGTAGAAGCATATTCTTTGCTTTCAAATGAAACAGATGCTAATGGTAGAAAGTTTGAAATCATTAAACTCCATGTTCCCAGTCCACTCTATATGACAGAGGACGAGGCTGCTGGGGTTTCTCTGGATAATGAGGCTAAGCCAAGACTTCCAGGTACTAGGCTTGCTGCTTCCTATGTAAACTTTTACATTGCAAATAAAGCTATCATTGCACCACAATTTGGAGATAAAAAGTGGGATGATGAAGCTGTCCGAGTCCTATCTAAGGCCTTCCCTCATCATGAAGTTGTGGGAATTGAAGGTGCCAGGGAGATTGTTTTGGCCGGTGGAAATATACATTGCATTACTCAGCAACAACCAGCCATTTGAGCGGCGGCACTCTCGATATTCGTTGATAGGTGTTGTATTGTTGCTTATGGGTTTCCAGAATAAATTGATTTGGTTAAATTGCTTGGTTAGTTAGTTGGTTTGCTCCAATTGGGCATGTATGCTAATTTTTGGAGATTAGCAAAATCCAATAATTGCAGCCTGGATGAAAGTGTATGCAAATAGATGGAAAACCGTTGAAAATATAAAACCTAATTTATATTTAAATTGGGAAATTGTGGTTACTCTTAAATGATTGAATCGGAATTTTTAGTGGAACCAGCTATTGATTTAACT
Coding sequences of Glyma.17g083400
>Glyma.17g083400.1 sequence-type=CDS polypeptide=Glyma.17g083400.1.p locus=Glyma.17g083400 ID=Glyma.17g083400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGATGCATCTAAACGGGACACCGTGCGCTCTCGGATTCCACATGCCTGCGGAGTGGGAAACCCACGCGCAGTGCTGGATGGGTTGGCCTGAACGTGCCGATAACTGGCGTGACGGCGCCGTTCACGCCCAACGCGTGTTTGCGAGGGTAGCGTCAGCAATCTCAAGATTCGAGTCTGTAACAGTTTGTGTTAGTTCTGCACAGTGGGAGAACGCGCGGAGTCAGCTACCGGAGCATATCAGGGTCGTTGAGATGAACATGAACGATTCTTGGTTCCGTGATATTGGACCTACTTTTGTTGTGAGAAGAAGCACCACGCCGGAATCTGGTGATGCAGTGAGCAGGATTGCAGGGATTGACTGGAATTTTAATAGTTGGGGAGGCTTAGAAGATGGATGTTACTGTGATTGGAGTCTTGATTTGCTTGTGGCTAAGAAGATTTTGGGAATTGAGAAGATTCCTAGATTTTCACATTCGATGGTGCTTGAAGGTGGAAGCATCCATGTGGATGGAGAAGGAACTTGTCTTACCACAGAAGAGTGCCTCTTGAACAAGAACAGGAACCCTCACTTGAGTAAGAACCAAATAGAGGATGAACTTAAGACATATCTTGGAATCCGGAAGGTTATATGGTTGCCTCGTGGATTATATGGAGATGATGACACAAATGGTCATATTGATAACATGTGCTGTTTTGTGAGGCCTGGTGTGGTTATGCTGTCTTGGATTGATGATGAAACTGATCCTCAGTATGAAAGATCTGTAGAAGCATATTCTTTGCTTTCAAATGAAACAGATGCTAATGGTAGAAAGTTTGAAATCATTAAACTCCATGTTCCCAGTCCACTCTATATGACAGAGGACGAGGCTGCTGGGGTTTCTCTGGATAATGAGGCTAAGCCAAGACTTCCAGGTACTAGGCTTGCTGCTTCCTATGTAAACTTTTACATTGCAAATAAAGCTATCATTGCACCACAATTTGGAGATAAAAAGTGGGATGATGAAGCTGTCCGAGTCCTATCTAAGGCCTTCCCTCATCATGAAGTTGTGGGAATTGAAGGTGCCAGGGAGATTGTTTTGGCCGGTGGAAATATACATTGCATTACTCAGCAACAACCAGCCATTTGA

>Glyma.17g083400.2 sequence-type=CDS polypeptide=Glyma.17g083400.2.p locus=Glyma.17g083400 ID=Glyma.17g083400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGATGCATCTAAACGGGACACCGTGCGCTCTCGGATTCCACATGCCTGCGGAGTGGGAAACCCACGCGCAGTGCTGGATGGGTTGGCCTGAACGTGCCGATAACTGGCGTGACGGCGCCGTTCACGCCCAACGCGTGTTTGCGAGGGTAGCGTCAGCAATCTCAAGATTCGAGTCTGTAACAGTTTGTGTTAGTTCTGCACAGTGGGAGAACGCGCGGAGTCAGCTACCGGAGCATATCAGGGTCGTTGAGATGAACATGAACGATTCTTGGTTCCGTGATATTGGACCTACTTTTGTTGTGAGAAGAAGCACCACGCCGGAATCTGGTGATGCAGTGAGCAGGATTGCAGGGATTGACTGGAATTTTAATAGTTGGGGAGGCTTAGAAGATGGATGTTACTGTGATTGGAGTCTTGATTTGCTTGTGGCTAAGAAGATTTTGGGAATTGAGAAGATTCCTAGATTTTCACATTCGATGGTGCTTGAAGGTGGAAGCATCCATGTGGATGGAGAAGGAACTTGTCTTACCACAGAAGAGTGCCTCTTGAACAAGAACAGGAACCCTCACTTGAGTAAGAACCAAATAGAGGATGAACTTAAGACATATCTTGGAATCCGGAAGGTTATATGGTTGCCTCGTGGATTATATGGAGATGATGACACAAATGGTCATATTGATAACATGTGCTGTTTTGTGAGGCCTGGTGTGGTTATGCTGTCTTGGATTGATGATGAAACTGATCCTCAGTATGAAAGATCTGTAGAAGCATATTCTTTGCTTTCAAATGAAACAGATGCTAATGGTAGAAAGTTTGAAATCATTAAACTCCATGTTCCCAGTCCACTCTATATGACAGAGGACGAGGCTGCTGGGGTTTCTCTGGATAATGAGGCTAAGCCAAGACTTCCAGGTACTAGGCTTGCTGCTTCCTATGTAAACTTTTACATTGCAAATAAAGCTATCATTGCACCACAATTTGGAGATAAAAAGTGGGATGATGAAGCTGTCCGAGTCCTATCTAAGGCCTTCCCTCATCATGAAGTTGTGGGAATTGAAGGTGCCAGGGAGATTGTTTTGGCCGGTGGAAATATACATTGCATTACTCAGCAACAACCAGCCATTTGA
Predicted protein sequences of Glyma.17g083400
>Glyma.17g083400.1.p sequence-type=predicted peptide transcript=Glyma.17g083400.1 locus=Glyma.17g083400 ID=Glyma.17g083400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVMHLNGTPCALGFHMPAEWETHAQCWMGWPERADNWRDGAVHAQRVFARVASAISRFESVTVCVSSAQWENARSQLPEHIRVVEMNMNDSWFRDIGPTFVVRRSTTPESGDAVSRIAGIDWNFNSWGGLEDGCYCDWSLDLLVAKKILGIEKIPRFSHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLSKNQIEDELKTYLGIRKVIWLPRGLYGDDDTNGHIDNMCCFVRPGVVMLSWIDDETDPQYERSVEAYSLLSNETDANGRKFEIIKLHVPSPLYMTEDEAAGVSLDNEAKPRLPGTRLAASYVNFYIANKAIIAPQFGDKKWDDEAVRVLSKAFPHHEVVGIEGAREIVLAGGNIHCITQQQPAI*

>Glyma.17g083400.2.p sequence-type=predicted peptide transcript=Glyma.17g083400.2 locus=Glyma.17g083400 ID=Glyma.17g083400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVMHLNGTPCALGFHMPAEWETHAQCWMGWPERADNWRDGAVHAQRVFARVASAISRFESVTVCVSSAQWENARSQLPEHIRVVEMNMNDSWFRDIGPTFVVRRSTTPESGDAVSRIAGIDWNFNSWGGLEDGCYCDWSLDLLVAKKILGIEKIPRFSHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLSKNQIEDELKTYLGIRKVIWLPRGLYGDDDTNGHIDNMCCFVRPGVVMLSWIDDETDPQYERSVEAYSLLSNETDANGRKFEIIKLHVPSPLYMTEDEAAGVSLDNEAKPRLPGTRLAASYVNFYIANKAIIAPQFGDKKWDDEAVRVLSKAFPHHEVVGIEGAREIVLAGGNIHCITQQQPAI*






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